; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G04357 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04357
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr08:12966006..12967369
RNA-Seq ExpressionClc08G04357
SyntenyClc08G04357
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS33695.1 hypothetical protein Acr_00g0030110 [Actinidia rufa]9.7e-2042.28Show/hide
Query:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI
        +  ++IGEP++Y DHL+Y L GLG +YN FVTSIQ++  RPSI +V SL+L+Y+ARLE+Q++ D LS +QAN+A+++       PK+    P    +P  
Subjt:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI

Query:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF
        N    P  QNR            P P+C IC K GHT    Y   NL++
Subjt:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]7.4e-2845.95Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSV------SNNSRCP-KWSP-
        ++  K S+IGEP+S +DH+ YI+EGLG EYN+FVTSIQNR+D  ++ DV +L+LAY+ RLEKQ SVDQL+++QANVA++ +      + N R P + SP 
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSV------SNNSRCP-KWSP-

Query:  -----SGPLVLFYPPINCS-PW-PSQNRPPNP--QCHICSKFGHTTLSYYSLHNLSF-YTFLQARTPTHHADFTQIASHVPSFAQ
             + P +L  P  N   PW PSQ  P NP  QC IC K GHTT   Y   NL +   F     P  HA F  + S    F Q
Subjt:  -----SGPLVLFYPPINCS-PW-PSQNRPPNP--QCHICSKFGHTTLSYYSLHNLSF-YTFLQARTPTHHADFTQIASHVPSFAQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.5e-2844.94Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--CPKWS-------
        ++ DKF+A+GEPLSYRDHL ++L+GLG+EYN+FVTSI NR D PS+ DV SL+LAYEARL+KQ +VDQL++ QAN+ ++S+ +NS+   PK+S       
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--CPKWS-------

Query:  --PSGPL------VLFYPPINCSPWPSQNRPPNPQCHICSKFGHTTLSYYSLHNLSFY
          P+ P+       +   P +   WP +      QC IC K GH+    Y   N++++
Subjt:  --PSGPL------VLFYPPINCSPWPSQNRPPNPQCHICSKFGHTTLSYYSLHNLSFY

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]3.1e-2667.78Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKW
        DV D F+AIGEPLSYRDHL YILEGLG+EYN FV+SI NRT+RPSIADV +L++ Y++RLEKQT+ D L LIQANVA +S+++ +R P+W
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKW

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]1.9e-2340.11Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--------------
        DV DKFS +GE +SYRDHL +IL+GLG+EYN+FVTSIQN  D  S+ DV SL+L+YEA+LEKQ ++D L++ QA ++ +S  +NS+              
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--------------

Query:  --CPKWSPSGP----LVLFYPPINCSPWPSQNRPPN-PQCHICSKFGH--------TTLSYYSLHNLSFYTFLQARTPTHHADFTQI
           P +SP  P     V   P  N   WP    P + PQC I  KFGH         + +Y  ++  +  + +Q  TPT   D   I
Subjt:  --CPKWSPSGP----LVLFYPPINCSPWPSQNRPPN-PQCHICSKFGH--------TTLSYYSLHNLSFYTFLQARTPTHHADFTQI

TrEMBL top hitse value%identityAlignment
A0A6J1D6N7 uncharacterized protein LOC1110174383.6e-2845.95Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSV------SNNSRCP-KWSP-
        ++  K S+IGEP+S +DH+ YI+EGLG EYN+FVTSIQNR+D  ++ DV +L+LAY+ RLEKQ SVDQL+++QANVA++ +      + N R P + SP 
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSV------SNNSRCP-KWSP-

Query:  -----SGPLVLFYPPINCS-PW-PSQNRPPNP--QCHICSKFGHTTLSYYSLHNLSF-YTFLQARTPTHHADFTQIASHVPSFAQ
             + P +L  P  N   PW PSQ  P NP  QC IC K GHTT   Y   NL +   F     P  HA F  + S    F Q
Subjt:  -----SGPLVLFYPPINCS-PW-PSQNRPPNP--QCHICSKFGHTTLSYYSLHNLSF-YTFLQARTPTHHADFTQIASHVPSFAQ

A0A6J1DQX7 uncharacterized protein LOC1110223157.2e-2944.94Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--CPKWS-------
        ++ DKF+A+GEPLSYRDHL ++L+GLG+EYN+FVTSI NR D PS+ DV SL+LAYEARL+KQ +VDQL++ QAN+ ++S+ +NS+   PK+S       
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSR--CPKWS-------

Query:  --PSGPL------VLFYPPINCSPWPSQNRPPNPQCHICSKFGHTTLSYYSLHNLSFY
          P+ P+       +   P +   WP +      QC IC K GH+    Y   N++++
Subjt:  --PSGPL------VLFYPPINCSPWPSQNRPPNPQCHICSKFGHTTLSYYSLHNLSFY

A0A7J0DER3 Uncharacterized protein4.7e-2042.28Show/hide
Query:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI
        +  ++IGEP++Y DHL+Y L GLG +YN FVTSIQ++  RPSI +V SL+L+Y+ARLE+Q++ D LS +QAN+A+++       PK+    P    +P  
Subjt:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI

Query:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF
        N    P  QNR            P P+C IC K GHT    Y   NL++
Subjt:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF

A0A7J0E8R3 Uncharacterized protein4.7e-2042.28Show/hide
Query:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI
        +  ++IGEP++Y DHL+Y L GLG +YN FVTSIQ++  RPSI +V SL+L+Y+ARLE+Q++ D LS +QAN+A+++       PK+    P    +P  
Subjt:  DKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPI

Query:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF
        N    P  QNR            P P+C IC K GHT    Y   NL++
Subjt:  NCSPWP-SQNR-----------PPNPQCHICSKFGHTTLSYYSLHNLSF

A5BPS3 Uncharacterized protein1.7e-1736.99Show/hide
Query:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSN------NSRCPKWS---
        +V DK+SA+GEPLSYRD L+Y L GL  EY+ FVTSI NR+D+ S+ +V SL+  Y   LE++ +  QL   Q N+ + S  N          PK+    
Subjt:  DVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSN------NSRCPKWS---

Query:  ----PSGPLVLFY----------------PPINCSPW----PSQNRPPNPQCHICSKFGHTTLSYYSLHNLSF
            P+ P+ L+                  P + S W     + N  P PQC IC KFGH  L+ Y   NL++
Subjt:  ----PSGPLVLFY----------------PPINCSPW----PSQNRPPNPQCHICSKFGHTTLSYYSLHNLSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAATGAGTTAGATGTAGAAGATAAATTTTCTGCTATTGGCGAGCCTCTTTCTTACCGTGATCACTTGGTATACATCCTTGAAGGGTTGGGTAATGAATATAATTC
ATTTGTCACCTCTATTCAAAATCGCACTGATAGACCCTCCATTGCAGATGTTTGTAGTCTCGTGTTGGCTTATGAAGCTCGATTGGAAAAACAAACTTCAGTTGATCAGC
TCAGTTTAATTCAAGCTAATGTTGCAAGCATGTCTGTCTCAAATAATTCTCGTTGCCCAAAATGGTCTCCATCAGGTCCCCTCGTCCTTTTTTATCCTCCTATAAATTGT
TCACCATGGCCTTCTCAAAATCGCCCTCCTAATCCTCAATGCCATATATGCTCCAAGTTTGGTCACACAACCTTGTCCTACTATAGCCTTCACAATCTATCCTTCTATAC
TTTTCTTCAAGCTCGCACTCCAACACATCATGCTGACTTTACTCAAATCGCTTCCCATGTTCCTTCATTTGCTCAACCTTTTGATATGTCTTACTCCAGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAATGAGTTAGATGTAGAAGATAAATTTTCTGCTATTGGCGAGCCTCTTTCTTACCGTGATCACTTGGTATACATCCTTGAAGGGTTGGGTAATGAATATAATTC
ATTTGTCACCTCTATTCAAAATCGCACTGATAGACCCTCCATTGCAGATGTTTGTAGTCTCGTGTTGGCTTATGAAGCTCGATTGGAAAAACAAACTTCAGTTGATCAGC
TCAGTTTAATTCAAGCTAATGTTGCAAGCATGTCTGTCTCAAATAATTCTCGTTGCCCAAAATGGTCTCCATCAGGTCCCCTCGTCCTTTTTTATCCTCCTATAAATTGT
TCACCATGGCCTTCTCAAAATCGCCCTCCTAATCCTCAATGCCATATATGCTCCAAGTTTGGTCACACAACCTTGTCCTACTATAGCCTTCACAATCTATCCTTCTATAC
TTTTCTTCAAGCTCGCACTCCAACACATCATGCTGACTTTACTCAAATCGCTTCCCATGTTCCTTCATTTGCTCAACCTTTTGATATGTCTTACTCCAGTCCTTGA
Protein sequenceShow/hide protein sequence
MLNELDVEDKFSAIGEPLSYRDHLVYILEGLGNEYNSFVTSIQNRTDRPSIADVCSLVLAYEARLEKQTSVDQLSLIQANVASMSVSNNSRCPKWSPSGPLVLFYPPINC
SPWPSQNRPPNPQCHICSKFGHTTLSYYSLHNLSFYTFLQARTPTHHADFTQIASHVPSFAQPFDMSYSSP