; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G04420 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04420
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like
Genome locationClcChr08:13378288..13379411
RNA-Seq ExpressionClc08G04420
SyntenyClc08G04420
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056011.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]7.1e-1367.74Show/hide
Query:  WVISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  WVISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
KAA0056523.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]3.8e-1475.86Show/hide
Query:  ISSSSGNARGTGNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM  PPPPPNISQTTKH+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
TYK03706.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. makuwa]7.9e-1266.67Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA   GNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T S+WDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
TYK15892.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.2e-1270Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
TYK26463.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.2e-1270Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
TrEMBL top hitse value%identityAlignment
A0A5A7UKW0 Zinc finger BED domain-containing protein RICESLEEPER 2-like1.8e-1475.86Show/hide
Query:  ISSSSGNARGTGNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM  PPPPPNISQTTKH+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
A0A5A7UR09 Zinc finger BED domain-containing protein RICESLEEPER 2-like3.4e-1367.74Show/hide
Query:  WVISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  WVISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
A0A5D3BZT5 Zinc finger BED domain-containing protein RICESLEEPER 1-like3.8e-1266.67Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA   GNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T S+WDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
A0A5D3CWJ0 Zinc finger BED domain-containing protein RICESLEEPER 2-like5.9e-1370Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
A0A5D3DSA5 Zinc finger BED domain-containing protein RICESLEEPER 2-like5.9e-1370Show/hide
Query:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
        + SSS NA  TGNNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Subjt:  ISSSSGNARGTGNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCATGAGTTCTCTCTCTCTCCTTCTCAATCTATTGTGTTCGTGTATCGTTTATCTTTATCGCATACTCCCACTTACGTAGAGTCACACACGCGGCACATAGTCCT
CCGTCCATCATCAATCTCTCCTTCCCAATCTATCCGTTTGTCGATCTCTCCATCTTTAGTTATGTCCTCAGTCCTCCGTCCGTCGATCTCTCCGTCCCGATCTATCCGTC
CGTCGATCTCCCATCTCTCCGTCTCAGTCTATTCCGTTCGTTGGGTGATATCCAGCAGTAGTGGAAATGCAAGGGGTACCGGTAATAATGAAATGTATCCTCCTCCTCCT
CCTCCTAATATAAGTCAAACTACTAAACATATACCACCTTTACCTCCCAAGTCCAATAGAAAGAAACCTAAGAAACCAACTTGTTCTGTGTGGGATCATTTCACAAAAAT
ATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCATGAGTTCTCTCTCTCTCCTTCTCAATCTATTGTGTTCGTGTATCGTTTATCTTTATCGCATACTCCCACTTACGTAGAGTCACACACGCGGCACATAGTCCT
CCGTCCATCATCAATCTCTCCTTCCCAATCTATCCGTTTGTCGATCTCTCCATCTTTAGTTATGTCCTCAGTCCTCCGTCCGTCGATCTCTCCGTCCCGATCTATCCGTC
CGTCGATCTCCCATCTCTCCGTCTCAGTCTATTCCGTTCGTTGGGTGATATCCAGCAGTAGTGGAAATGCAAGGGGTACCGGTAATAATGAAATGTATCCTCCTCCTCCT
CCTCCTAATATAAGTCAAACTACTAAACATATACCACCTTTACCTCCCAAGTCCAATAGAAAGAAACCTAAGAAACCAACTTGTTCTGTGTGGGATCATTTCACAAAAAT
ATAA
Protein sequenceShow/hide protein sequence
MPHEFSLSPSQSIVFVYRLSLSHTPTYVESHTRHIVLRPSSISPSQSIRLSISPSLVMSSVLRPSISPSRSIRPSISHLSVSVYSVRWVISSSSGNARGTGNNEMYPPPP
PPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI