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Clc08G04557 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04557
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr08:13743236..13746262
RNA-Seq ExpressionClc08G04557
SyntenyClc08G04557
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8651440.1 hypothetical protein MANES_07G125402v8 [Manihot esculenta]7.0e-1635.84Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPEC
        +GN  A  A+ DLV   +PSILFL ETK       ++K + ++S  FSV+SIG  GGLSL+W + V L+V ++S N  D  IG   ++W FT  YG PE 
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPEC

Query:  LRYRIENGNTIRVFQD----PWLPRCSTFKP-----IGGCPDDKQTRAMDSIDPNGNWVKSKLEES--FCSED
         R R  + N +R        PWL  C  +       I G        ++  I  NG+++     E   FCS++
Subjt:  LRYRIENGNTIRVFQD----PWLPRCSTFKP-----IGGCPDDKQTRAMDSIDPNGNWVKSKLEES--FCSED

XP_021618023.1 uncharacterized protein LOC110619075 [Manihot esculenta]4.5e-1540.29Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPEC
        +GN  A  A+ DLV   +PSILFL ETK       ++K + ++S  FSV+SIG  GGLSL+W + V L+V ++S N  D  IG   ++W FT  YG PE 
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPEC

Query:  LRYRIENGNTIRVFQD----PWLPRCSTFKPIGGCPDDK
         R R  + N +R        PWL  C  +  I   P++K
Subjt:  LRYRIENGNTIRVFQD----PWLPRCSTFKPIGGCPDDK

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.7e-1434.96Show/hide
Query:  VIFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWL
        ++  + + R+    WKG  W    L    + LR R+ NG+TI +F DPW+PR  +F+PI         +  D I+PNG W    +   FC ED ++I  +
Subjt:  VIFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWL

Query:  PTNP-RLQDKWIWLFNNKGIYLV
        P +P    D WIW F+ +G Y V
Subjt:  PTNP-RLQDKWIWLFNNKGIYLV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.0e-1636.89Show/hide
Query:  IFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWLP
        +  + N+  S   WKG  W    L    + LR R+ NG+TI+ F DPWLPR +TFKP+        T     I  +GNW  + +  SFC+ED ++I  +P
Subjt:  IFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWLP

Query:  -TNPRLQDKWIWLFNNKGIYLV
         ++  LQD W+W ++ +G Y V
Subjt:  -TNPRLQDKWIWLFNNKGIYLV

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]1.7e-1439.55Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEI--GWKGSKWSFTCLYGHP
        LGN R  RAL DLV+   P +LFL ETK        +K++  +   F+V+S G  GGL+L+W ++ +L V  YS+NH D+ I       +W FT +YGHP
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEI--GWKGSKWSFTCLYGHP

Query:  ECLRYRIENGNTIRVFQD----PWLPRCSTFKPI
        +    R E  NTIR  +     PWL  C  F  +
Subjt:  ECLRYRIENGNTIRVFQD----PWLPRCSTFKPI

TrEMBL top hitse value%identityAlignment
A0A2N9FD73 Uncharacterized protein4.6e-1341.13Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWK-GSKWSFTCLYGHPE
        LGN  A RAL  LVK++ P ILFL ETK       +++ V  ++  F+V S+G  GGL+LLW + + L +  +S +H DS I +K G  W  T  YG PE
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWK-GSKWSFTCLYGHPE

Query:  CLRYRIENGNTI----RVFQDPWL
          R R E+   +    R+ Q PWL
Subjt:  CLRYRIENGNTI----RVFQDPWL

A0A2N9I611 Uncharacterized protein4.6e-1344.44Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPE
        LGN RA R L DL K + P +LFLSETK   E    ++    +   F V S G  GGL+LLW + VDL +  Y++ H D++I  +   W FT  YGHPE
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPE

A0A6J1BRN0 uncharacterized protein LOC1110047878.3e-1534.96Show/hide
Query:  VIFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWL
        ++  + + R+    WKG  W    L    + LR R+ NG+TI +F DPW+PR  +F+PI         +  D I+PNG W    +   FC ED ++I  +
Subjt:  VIFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWL

Query:  PTNP-RLQDKWIWLFNNKGIYLV
        P +P    D WIW F+ +G Y V
Subjt:  PTNP-RLQDKWIWLFNNKGIYLV

A0A6J1DX30 uncharacterized protein LOC1110248743.4e-1636.89Show/hide
Query:  IFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWLP
        +  + N+  S   WKG  W    L    + LR R+ NG+TI+ F DPWLPR +TFKP+        T     I  +GNW  + +  SFC+ED ++I  +P
Subjt:  IFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIENGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWLP

Query:  -TNPRLQDKWIWLFNNKGIYLV
         ++  LQD W+W ++ +G Y V
Subjt:  -TNPRLQDKWIWLFNNKGIYLV

A0A803PU35 Uncharacterized protein2.7e-1343.43Show/hide
Query:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKG-SKWSFTCLYGHP
        LGN RAF+ +++LV  ++PSI+FLSET C  +    L     F G F V + G  GGL+LLW DK ++ +  YS+NH D+ I W+G  ++  T +YG P
Subjt:  LGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKG-SKWSFTCLYGHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGAGGATTTGGGTAATCTGAGGGCATTCCGTGCTTTGTCTGACCTGGTTAAGGCTAGACAACCATCTATCTTATTTCTTTCTGAGACTAAGTGTGGAGCAGAGAT
TTCATGTAAGTTGAAGAAAGTTGGCAATTTTTCTGGCTATTTTTCTGTGAACAGCATTGGTTCTAAAGGTGGTTTAAGTCTTCTTTGGCTGGACAAGGTTGATTTGAGAG
TAATCTTTTACTCTCAAAACCACAGAGACTCGGAAATTGGTTGGAAGGGTTCTAAATGGAGCTTCACTTGCTTATATGGTCACCCGGAATGTCTAAGATATCGAATTGAA
AATGGCAACACTATAAGAGTTTTCCAGGATCCTTGGTTACCAAGGTGTTCTACTTTTAAACCCATTGGGGGTTGTCCAGATGACAAGCAAACTCGTGCCATGGATTCCAT
TGATCCTAATGGTAATTGGGTTAAGAGCAAGCTGGAGGAATCTTTCTGCAGTGAAGATGTTGAAATTATTCGTTGGTTGCCAACTAATCCGAGACTTCAAGATAAGTGGA
TTTGGCTCTTTAATAATAAGGGTATCTATTTAGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGAGGATTTGGGTAATCTGAGGGCATTCCGTGCTTTGTCTGACCTGGTTAAGGCTAGACAACCATCTATCTTATTTCTTTCTGAGACTAAGTGTGGAGCAGAGAT
TTCATGTAAGTTGAAGAAAGTTGGCAATTTTTCTGGCTATTTTTCTGTGAACAGCATTGGTTCTAAAGGTGGTTTAAGTCTTCTTTGGCTGGACAAGGTTGATTTGAGAG
TAATCTTTTACTCTCAAAACCACAGAGACTCGGAAATTGGTTGGAAGGGTTCTAAATGGAGCTTCACTTGCTTATATGGTCACCCGGAATGTCTAAGATATCGAATTGAA
AATGGCAACACTATAAGAGTTTTCCAGGATCCTTGGTTACCAAGGTGTTCTACTTTTAAACCCATTGGGGGTTGTCCAGATGACAAGCAAACTCGTGCCATGGATTCCAT
TGATCCTAATGGTAATTGGGTTAAGAGCAAGCTGGAGGAATCTTTCTGCAGTGAAGATGTTGAAATTATTCGTTGGTTGCCAACTAATCCGAGACTTCAAGATAAGTGGA
TTTGGCTCTTTAATAATAAGGGTATCTATTTAGTCTGA
Protein sequenceShow/hide protein sequence
MFEDLGNLRAFRALSDLVKARQPSILFLSETKCGAEISCKLKKVGNFSGYFSVNSIGSKGGLSLLWLDKVDLRVIFYSQNHRDSEIGWKGSKWSFTCLYGHPECLRYRIE
NGNTIRVFQDPWLPRCSTFKPIGGCPDDKQTRAMDSIDPNGNWVKSKLEESFCSEDVEIIRWLPTNPRLQDKWIWLFNNKGIYLV