CuGenDBv2

Gene ID	Clc08G04600
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	RRM domain-containing protein
Genome location	ClcChr08:13902244..13907980
RNA-Seq Expression	Clc08G04600
Synteny	Clc08G04600
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-77

66.8

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Query:  TSNLLEISSMHFSYVEAWNRLVPCSFSVYCHFPLLVATHAPRSSLVLSFLLFGLISFEMGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFG
        TS       +HFS + +    V CS +      L VA   P        L    +S  MGS  D+Q+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFG
Subjt:  TSNLLEISSMHFSYVEAWNRLVPCSFSVYCHFPLLVATHAPRSSLVLSFLLFGLISFEMGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFG

Query:  TVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH--
        TVVSVHFIPN+TEPINSSQCALVEMKD KEA SVISVI+QFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL KDDPDFEVAKK+K LTQ+H  
Subjt:  TVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH--

Query:  -------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
                 L EEEKLAKQQQ+ALK NYKKYEIVE VM DGTAR     Y  RV D
Subjt:  -------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

5.3e-81

81.82

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA++IK L++KH          H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTAR     Y  R+ D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

6.3e-82

82.32

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS KD+QF MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
         EMFDDRPVKPGRKISF WLE DDPDFEVA++IK LT+KH          HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

9.4e-78

79.29

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS  D+Q+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD KEA SVISVISQFPFMMSGMPRPVRA PAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRP+KPGRKISF WL K+DPDFEVAKK+K LTQ+H           L EEEKLAKQQQ+ALKGNYKKYEI+E VM DGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

8.5e-87

86.87

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS KD+QF MFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+SQCALVEMKDLKEAKSVISVI+QFPFMMSGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRPVKPGRKISF+WLEKDDPDFEVAKK+KLLT+KH         HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

2.6e-81

81.82

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA++IK L++KH          H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTAR     Y  R+ D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

A0A1S3B3J3 uncharacterized protein LOC103485592

3.1e-82

82.32

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS KD+QF MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
         EMFDDRPVKPGRKISF WLE DDPDFEVA++IK LT+KH          HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

A0A6J1DB90 uncharacterized protein LOC111018537

6.6e-77

77.27

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS  ++QF  FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKDLKEAKSVISVI++FPFM+SGMPRPVRARPAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRP+KPG KISFSWL+++DPDF+VAKK+KL T+KH           L EEEKLAKQQQE LKGNYKK+EIVESVM DGTAR     Y  RVFD
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

A0A6J1H6P8 uncharacterized protein LOC111460615

2.3e-77

78.79

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS  D+Q+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD KEA SVIS+I+QFPFMMSGMPRPVRA PAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRP+KPGRKISF WL KDDPDFEVAKK+K LTQ+H           L EEEKLAKQQQ+ALK NYKKYEIVE VM DGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

A0A6J1KVQ1 uncharacterized protein LOC111498019

4.6e-78

79.29

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        MGS  D+Q+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKD KEA SVISVISQFPFMMSGMPRPVRA PAE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD
        VEMFDDRP+KPGRKISF WL K+DPDFEVAKK+K LTQ+H           L EEEKLAKQQQ+ALKGNYKKYEI+E VM DGTAR     Y  RV D
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARSRQIPYLRRVFD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.9e-40

45.65

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS +SQ PFM++GMPRPVRA  AE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHH-------HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTAR
          MF D+P KPGR + F W++ +DPDF+ A+++K L +KH         L E EKL+KQQ E    ++KK+E+++ ++ DG A+
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHH-------HLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTAR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

3.7e-40

45.16

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Query:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS +SQ PFM++GMPRPVRA  AE
Subjt:  MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTAR
          MF D+P KPGR + F W++ +DPDF+ A+++K L +KH           L E EKL+KQQ E    ++KK+E+++ ++ DG A+
Subjt:  VEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKH---------HHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTAR

Sequences

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CDS sequence

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ATGACAAGTAATCTTTTGGAGATTTCATCAATGCATTTCTCTTATGTAGAGGCCTGGAATCGTTTAGTTCCCTGTTCTTTCTCCGTGTACTGCCATTTCCCTCTCCTCGT
CGCTACTCATGCCCCTCGCTCATCGTTGGTTCTTTCGTTTCTCCTCTTCGGACTGATCTCATTCGAGATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGA
AGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCA
AACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTC
TGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATC
CTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTAC
AAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGCCGGCAAATTCCGTATCTCCGACGAGTATTTGATTCACGAGGACGAAGCTTCATCTTCAT
TGGTAAGTACAAATTAATCCCACTTCCTTCGCGGATAGCTTTTACCTTGGGGATGATTGAGGAAACAACTTCATCGGTGAAACTAGGGTGA

mRNA sequence

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Protein sequence

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MTSNLLEISSMHFSYVEAWNRLVPCSFSVYCHFPLLVATHAPRSSLVLSFLLFGLISFEMGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIP
NYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHHHLAEEEKLAKQQQEALKGNY
KKYEIVESVMADGTARSRQIPYLRRVFDSRGRSFIFIGKYKLIPLPSRIAFTLGMIEETTSSVKLG

Clc08G04600 (gene) of Watermelon (cordophanus) v2 genome