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Clc08G04740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr08:14295731..14296093
RNA-Seq ExpressionClc08G04740
SyntenyClc08G04740
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049915.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-4082.47Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL YF+IWGC A+VLVTNPK LEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNE T+ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

KAA0054515.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-4083.51Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL +FKIWGC A+VLVTNPKKLEP S L QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT+ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

KAA0063766.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-4079.41Show/hide
Query:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET
        +L C  GRK SL  F+IWGC  +VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE 
Subjt:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET

Query:  GP
        GP
Subjt:  GP

TYK02509.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-4083.51Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL +F+IWGC A+VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

TYK05518.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-4079.41Show/hide
Query:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET
        +L C  GRK SL  F+IWGC  +VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE 
Subjt:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET

Query:  GP
        GP
Subjt:  GP

TrEMBL top hitse value%identityAlignment
A0A5A7U8G7 Gag/pol protein2.7e-4082.47Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL YF+IWGC A+VLVTNPK LEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNE T+ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

A0A5A7ULG4 Gag/pol protein2.1e-4083.51Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL +FKIWGC A+VLVTNPKKLEP S L QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT+ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

A0A5A7VBG2 Gag/pol protein2.1e-4079.41Show/hide
Query:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET
        +L C  GRK SL  F+IWGC  +VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE 
Subjt:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET

Query:  GP
        GP
Subjt:  GP

A0A5D3BWL2 Gag/pol protein1.6e-4083.51Show/hide
Query:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP
        RGRK SL +F+IWGC A+VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE GP
Subjt:  RGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDETGP

A0A5D3C2T5 Gag/pol protein2.1e-4079.41Show/hide
Query:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET
        +L C  GRK SL  F+IWGC  +VLVTNPKKLEP SRL QFVGYP ET+GGLFFDPQEN+VFV+TNATFLEEDHMRDHKP+SK+VLNEAT ESTRVVDE 
Subjt:  NLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEESTRVVDET

Query:  GP
        GP
Subjt:  GP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCCTCGAAAAGTGTTTCTGAAACGTCTTTTGAGTTATGGAGGGGACGTAAACCTAGTTTGCGCTAGGGGACGTAAACATAGTTTGCGCTACTTCAAAATCTGGGG
TTGTCTTGCATATGTGCTAGTGACAAATCCTAAGAAATTGGAACCTCATTCAAGATTATTCCAATTTGTTGGTTACCCTAATGAAACGAAAGGTGGTCTCTTCTTCGACC
CACAAGAAAACAAAGTGTTTGTAACGACAAACGCTACATTCTTGGAAGAAGACCACATGAGAGATCATAAACCACAAAGCAAAATAGTATTAAATGAAGCTACTGAAGAG
TCAACAAGAGTTGTTGATGAGACTGGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCCTCGAAAAGTGTTTCTGAAACGTCTTTTGAGTTATGGAGGGGACGTAAACCTAGTTTGCGCTAGGGGACGTAAACATAGTTTGCGCTACTTCAAAATCTGGGG
TTGTCTTGCATATGTGCTAGTGACAAATCCTAAGAAATTGGAACCTCATTCAAGATTATTCCAATTTGTTGGTTACCCTAATGAAACGAAAGGTGGTCTCTTCTTCGACC
CACAAGAAAACAAAGTGTTTGTAACGACAAACGCTACATTCTTGGAAGAAGACCACATGAGAGATCATAAACCACAAAGCAAAATAGTATTAAATGAAGCTACTGAAGAG
TCAACAAGAGTTGTTGATGAGACTGGTCCTTGA
Protein sequenceShow/hide protein sequence
MFPRKVFLKRLLSYGGDVNLVCARGRKHSLRYFKIWGCLAYVLVTNPKKLEPHSRLFQFVGYPNETKGGLFFDPQENKVFVTTNATFLEEDHMRDHKPQSKIVLNEATEE
STRVVDETGP