; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G04795 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04795
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPMD domain-containing protein
Genome locationClcChr08:14501652..14502622
RNA-Seq ExpressionClc08G04795
SyntenyClc08G04795
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]2.6e-11268.55Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q ES  +WPK+ E+ LP+  +L F+ NNLE+LK LWE+L  E R +F +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIE+Y+ALI +    G K+Y+Y R+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

KAA0046606.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]6.6e-10868.75Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q +S  +WPK+ E+ LP+  +L F+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIE+Y+ALI +    G  +Y+YDR+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L  + GLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLK
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLK

KAA0060423.1 uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]1.6e-6647.69Show/hide
Query:  DSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQALVHFWDPMLKCFTFSMFD
        D    V +W+E++QQ+        S+IS+    +L F +N+L +LK +WE L  + R  F++ YG+I +LMY  ++   L+A+++FWDP   CFTF   D
Subjt:  DSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQALVHFWDPMLKCFTFSMFD

Query:  LTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKGYAE
        L PTIE+Y+A++ +       VY ++ ++T +R+LSKFL  +HA++I+K +K KGG   +P DYLI +T+ ++   KGL+LLALCIYG VIFP+ +GY +
Subjt:  LTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKGYAE

Query:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEF
         +VIKLF  +ERGVNPIIPI+AETFRSL+YCR +G+GK   C P+L+IWI SH+K+P+EF
Subjt:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEF

KAA0065295.1 uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa]4.4e-11268.2Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSW+ VSQWSE  Q ES  +WPK+ E+ LP+  +LEF+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LK FTF+ FDLTPTIE+Y+ALI +    G K+Y+YDR+ TLQRSLSKF+G+IHAS++KK MKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++C++QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

TYK16834.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]9.7e-6771.01Show/hide
Query:  MFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKG
        MFDLTPTIE+Y ALI +    G K+Y+YDR+ T++RSLSKF+G+IHAS++KKQ+K K GR+CIPI+YLI+L R  L  +KGLSL+ALCIYG +IFPRIKG
Subjt:  MFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKG

Query:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        Y EEEV+K+FVGIERGVNP+IPIM ETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase1.3e-11268.55Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q ES  +WPK+ E+ LP+  +L F+ NNLE+LK LWE+L  E R +F +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIE+Y+ALI +    G K+Y+Y R+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

A0A5A7TXA1 Glial fibrillary acidic protein-like3.2e-10868.75Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q +S  +WPK+ E+ LP+  +L F+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIE+Y+ALI +    G  +Y+YDR+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L  + GLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLK
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLK

A0A5A7UWQ6 Uncharacterized protein8.0e-6747.69Show/hide
Query:  DSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQALVHFWDPMLKCFTFSMFD
        D    V +W+E++QQ+        S+IS+    +L F +N+L +LK +WE L  + R  F++ YG+I +LMY  ++   L+A+++FWDP   CFTF   D
Subjt:  DSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQALVHFWDPMLKCFTFSMFD

Query:  LTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKGYAE
        L PTIE+Y+A++ +       VY ++ ++T +R+LSKFL  +HA++I+K +K KGG   +P DYLI +T+ ++   KGL+LLALCIYG VIFP+ +GY +
Subjt:  LTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKGYAE

Query:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEF
         +VIKLF  +ERGVNPIIPI+AETFRSL+YCR +G+GK   C P+L+IWI SH+K+P+EF
Subjt:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEF

A0A5A7VHI3 Uncharacterized protein2.1e-11268.2Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL
        MVDTHA  V A  IP+EDSW+ VSQWSE  Q ES  +WPK+ E+ LP+  +LEF+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LK FTF+ FDLTPTIE+Y+ALI +    G K+Y+YDR+ TLQRSLSKF+G+IHAS++KK MKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        LCIYG VIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++C++QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  LCIYGMVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

A0A5D3D0S2 Glial fibrillary acidic protein-like4.7e-6771.01Show/hide
Query:  MFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKG
        MFDLTPTIE+Y ALI +    G K+Y+YDR+ T++RSLSKF+G+IHAS++KKQ+K K GR+CIPI+YLI+L R  L  +KGLSL+ALCIYG +IFPRIKG
Subjt:  MFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKG

Query:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR
        Y EEEV+K+FVGIERGVNP+IPIM ETFRSL++CR+QGKGKFFSCAPMLFIWISSHL+YP+ FG   I+
Subjt:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGACACTCATGCGCCTGGGGTATTTGCCCACACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCACAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATGTGC
TTGGCCTAAAAGATCTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAAAATTTAGCCTTGGAGCATA
GAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGTACTGCAAGCCTTGGTACACTTTTGGGACCCTATGTTGAAATGT
TTCACATTCAGTATGTTTGACCTAACTCCCACTATAGAGAAATATCGAGCTCTCATCGGCATACTACCTTGCATAGGAGGAAAGGTCTACGTCTATGATCGGAGGCGAAC
TCTACAAAGATCATTGTCCAAGTTCTTGGGTAATATTCATGCATCTGATATAAAAAAGCAGATGAAGACAAAAGGAGGGAGAAGTTGTATCCCTATTGATTATTTAATCA
GCCTTACGCGTGCATTTTTGCCTGGGAGGAAAGGTCTGTCTCTTTTGGCATTATGTATTTACGGTATGGTTATCTTTCCAAGAATTAAGGGGTATGCAGAAGAAGAAGTT
ATTAAACTTTTCGTTGGAATAGAGAGAGGTGTGAACCCCATTATCCCAATCATGGCGGAAACCTTTAGATCATTGAGCTATTGCCGAGTCCAAGGCAAGGGGAAGTTCTT
CAGCTGCGCTCCAATGCTTTTTATATGGATTTCTAGCCATTTGAAGTATCCAAGCGAGTTTGGGCCATCTAACATCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGACACTCATGCGCCTGGGGTATTTGCCCACACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCACAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATGTGC
TTGGCCTAAAAGATCTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAAAATTTAGCCTTGGAGCATA
GAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGTACTGCAAGCCTTGGTACACTTTTGGGACCCTATGTTGAAATGT
TTCACATTCAGTATGTTTGACCTAACTCCCACTATAGAGAAATATCGAGCTCTCATCGGCATACTACCTTGCATAGGAGGAAAGGTCTACGTCTATGATCGGAGGCGAAC
TCTACAAAGATCATTGTCCAAGTTCTTGGGTAATATTCATGCATCTGATATAAAAAAGCAGATGAAGACAAAAGGAGGGAGAAGTTGTATCCCTATTGATTATTTAATCA
GCCTTACGCGTGCATTTTTGCCTGGGAGGAAAGGTCTGTCTCTTTTGGCATTATGTATTTACGGTATGGTTATCTTTCCAAGAATTAAGGGGTATGCAGAAGAAGAAGTT
ATTAAACTTTTCGTTGGAATAGAGAGAGGTGTGAACCCCATTATCCCAATCATGGCGGAAACCTTTAGATCATTGAGCTATTGCCGAGTCCAAGGCAAGGGGAAGTTCTT
CAGCTGCGCTCCAATGCTTTTTATATGGATTTCTAGCCATTTGAAGTATCCAAGCGAGTTTGGGCCATCTAACATCAGATGA
Protein sequenceShow/hide protein sequence
MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRCAWPKRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQVLQALVHFWDPMLKC
FTFSMFDLTPTIEKYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGMVIFPRIKGYAEEEV
IKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFSCAPMLFIWISSHLKYPSEFGPSNIR