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Clc08G04896 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G04896
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr08:15075314..15075619
RNA-Seq ExpressionClc08G04896
SyntenyClc08G04896
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG96384.1 ADP glucose pyrophosphorylase large subunit 1 [Prunus dulcis]9.5e-3373.2Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ KKND +KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

KAA0033402.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-3376.04Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK
        MTTE NEGSFIQP  P  + H DHWSM MENFLRSKEYWELVEPGYVEPA+ SLQT AQ KKN ++KL+DLK+KNYLFQ+IDRTI ETIL KN  K
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK

KAF8404908.1 hypothetical protein HHK36_009803 [Tetracentron sinense]5.6e-3373.2Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

PNX85109.1 retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense]2.8e-3272.16Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSF+QP  P  D HYDHWSMLMENFLRSKEYWEL+EPGYVEPA+  + T+AQ KKND++KL+DLK KNYLFQ+IDRT+ ETILKK+T+K+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

RVW85339.1 hypothetical protein CK203_045529 [Vitis vinifera]1.2e-3272.16Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  PH D HYDHW+MLMENFLRSKE+W LVEPGY+EP   S+QT+AQ KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

TrEMBL top hitse value%identityAlignment
A0A2K3M2V4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)1.3e-3272.16Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSF+QP  P  D HYDHWSMLMENFLRSKEYWEL+EPGYVEPA+  + T+AQ KKND++KL+DLK KNYLFQ+IDRT+ ETILKK+T+K+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

A0A2N9J8J5 Integrase catalytic domain-containing protein2.1e-3374.23Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+WELVEPGY EPA+ S+QT+AQ KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

A0A438HLQ7 CCHC-type domain-containing protein6.0e-3372.16Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  PH D HYDHW+MLMENFLRSKE+W LVEPGY+EP   S+QT+AQ KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

A0A4Y1QX25 ADP glucose pyrophosphorylase large subunit 14.6e-3373.2Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ KKND +KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN

A0A5A7SQE0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-3376.04Show/hide
Query:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK
        MTTE NEGSFIQP  P  + H DHWSM MENFLRSKEYWELVEPGYVEPA+ SLQT AQ KKN ++KL+DLK+KNYLFQ+IDRTI ETIL KN  K
Subjt:  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein4.3e-0729.49Show/hide
Query:  AHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN
        ++YD+WS+ M+  L + + WE+VE G++EP N    ++ Q       + +D K    ++Q +D   FE +++  +AK+
Subjt:  AHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCGAAAAGAATGAAGGAAGTTTTATACAACCAACAAGTCCACACTTAGATGCTCACTATGATCATTGGAGCATGTTGATGGAAAATTTTCTTAGATCCAAGGA
ATATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAATGTGTCGTTGCAGACGGAAGCCCAACTAAAGAAAAATGATAAAATTAAGCTACAGGACTTGAAACTGA
AAAATTATCTCTTCCAATCCATTGACCGCACAATTTTTGAAACCATTCTCAAGAAAAATACTGCCAAGAATTATGGGATGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACCGAAAAGAATGAAGGAAGTTTTATACAACCAACAAGTCCACACTTAGATGCTCACTATGATCATTGGAGCATGTTGATGGAAAATTTTCTTAGATCCAAGGA
ATATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAATGTGTCGTTGCAGACGGAAGCCCAACTAAAGAAAAATGATAAAATTAAGCTACAGGACTTGAAACTGA
AAAATTATCTCTTCCAATCCATTGACCGCACAATTTTTGAAACCATTCTCAAGAAAAATACTGCCAAGAATTATGGGATGCTATGA
Protein sequenceShow/hide protein sequence
MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKNYGML