CuGenDBv2

Gene ID	Clc08G04898
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	ClcChr08:15076045..15076557
RNA-Seq Expression	Clc08G04898
Synteny	Clc08G04898
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0050826 - response to freezing (biological process) GO:0098655 - cation transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003690 - double-stranded DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function) GO:0019829 - ATPase-coupled cation transmembrane transporter activity (molecular function) GO:0071949 - FAD binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8527475.1 hypothetical protein F0562_034810 [Nyssa sinensis]

2.9e-58

73.42

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Query:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN
        ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNHMCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+
Subjt:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN

Query:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR
        GVNHVVAEVYYIP+L +NLLSIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Subjt:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR

KAA8539565.1 hypothetical protein F0562_026257 [Nyssa sinensis]

2.9e-58

73.42

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Query:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN
        ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNHMCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+
Subjt:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN

Query:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR
        GVNHVVAEVYYIP+L +NLLSIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Subjt:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR

MCH87416.1 hypothetical protein [Trifolium medium]

3.8e-58

70.73

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Query:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG
        M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHMCGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG
Subjt:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG

Query:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ
         N +V EVYYIP+L +NLLSIGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Subjt:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ

PNX96091.1 retrotransposon-related protein [Trifolium pratense]

3.8e-58

70.73

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Query:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG
        M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHMCGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG
Subjt:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG

Query:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ
         N +V EVYYIP+L +NLLSIGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Subjt:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ

XP_031737643.1 uncharacterized protein LOC105435094 [Cucumis sativus]

9.0e-68

81.1

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Query:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG
        +QC+RCQK G+FQYECSENKEANY++ DEEEE   MSY E HGVQREDTW LDF CSNHMCGDRSMFS+LNEDFRHS+KL  NT+MNVMGKGNVK L+NG
Subjt:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG

Query:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ
        VNHVVAEVYYIPDLSSNLLSIGQLQEK +SILIK GECKIFHPK  LIIQ KMSN+R  TLQ Q
Subjt:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ

TrEMBL top hits

e value

%identity

Alignment

A0A2K3MZ63 Retrotransposon-related protein

1.8e-58

70.73

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Query:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG
        M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHMCGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG
Subjt:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG

Query:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ
         N +V EVYYIP+L +NLLSIGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Subjt:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ

A0A2N9H9R9 Uncharacterized protein

4.3e-60

74.68

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Query:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN
        ++CYRC +LGHF+YEC SENKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNHMCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG+VK LLN
Subjt:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN

Query:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR
        GVNHVVAEVYYIP+L +NLLSIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Subjt:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR

A0A392MIS2 CCHC-type domain-containing protein (Fragment)

1.8e-58

70.73

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Query:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG
        M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHMCGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG
Subjt:  MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNG

Query:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ
         N +V EVYYIP+L +NLLSIGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Subjt:  VNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ

A0A5J5A8T6 CCHC-type domain-containing protein

1.4e-58

73.42

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Query:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN
        ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNHMCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+
Subjt:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN

Query:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR
        GVNHVVAEVYYIP+L +NLLSIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Subjt:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR

A0A5J5B8J4 CCHC-type domain-containing protein

1.4e-58

73.42

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Query:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN
        ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNHMCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+
Subjt:  MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLN

Query:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR
        GVNHVVAEVYYIP+L +NLLSIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Subjt:  GVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAGTGTTATCGATGCCAAAAACTTGGACATTTCCAATATGAATGTTCTGAAAATAAAGAAGCAAACTATTCTAAACGTGATGAGGAAGAAGAAACGCTTTTCATGTC
TTATGTGGAAATGCATGGAGTCCAAAGAGAAGATACATGGTTTCTTGATTTCGAGTGTTCTAATCATATGTGTGGTGATCGATCAATGTTTAGTGAGCTCAATGAAGATT
TCCGACATTCAATAAAATTGGAAAACACTAAAATGAATGTGATGGGCAAAGGAAATGTAAAGTTCCTGCTAAATGGAGTTAATCATGTTGTTGCTGAGGTATATTATATT
CCAGATTTGAGTAGTAACCTATTGAGTATAGGGCAATTGCAAGAAAAAGACTTGTCTATTTTGATCAAGGCAGGGGAGTGCAAAATATTTCATCCAAAGAAGGGTTTGAT
TATTCAAACCAAAATGAGCAACAATAGAACTTTGCAAACTCAAAACTCAAATTTCTTCTCAAATGCAACATGA

mRNA sequence

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Protein sequence

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MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKLENTKMNVMGKGNVKFLLNGVNHVVAEVYYI
PDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNRTLQTQNSNFFSNAT

Clc08G04898 (gene) of Watermelon (cordophanus) v2 genome