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Clc08G05075 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05075
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
Genome locationClcChr08:15562509..15564536
RNA-Seq ExpressionClc08G05075
SyntenyClc08G05075
Gene Ontology termsNA
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QWY86649.1 Ycf2 [Prioria balsamifera]1.5e-0648.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
QWY86732.1 Ycf2 [Prioria oxyphylla]1.5e-0648.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
WP_165486117.1 Ycf2, partial [Candidatus Frankia meridionalis]1.5e-0693.1Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
        G+AS GNMLWGGGPAYGVKSIRSKKKDWN
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
YP_009765632.1 Ycf2 [Copaifera officinalis]9.0e-0750Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +FL     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
YP_009767706.1 putative ATPase linked to protein import [Neoapaloxylon tuberosum]1.5e-0648.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
TrEMBL top hitse value%identityAlignment
A0A6H0E1H3 Protein Ycf24.4e-0750Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +FL     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
A0A6H0E1S6 Protein Ycf27.5e-0748.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
A0A6H0E7P4 Protein Ycf27.5e-0748.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
A0A6H0E8Q9 Protein Ycf27.5e-0748.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
A0A6H0EB81 Protein Ycf27.5e-0748.57Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
        GFAS GNMLWGGGPAYGVKSIRSKKK WN  +F+     P N  A         HT+  ++  +  R  +
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN--NFLKYF--PYNGSAAQHPRLSAVHTNIGLFLALSSRNRL
SwissProt top hitse value%identityAlignment
A4GGE1 Protein Ycf22.5e-0785.71Show/hide
Query:  FASSGNMLWGGGPAYGVKSIRSKKKDWN
        FA  GNMLWGGGPAYGVKSIRSK K WN
Subjt:  FASSGNMLWGGGPAYGVKSIRSKKKDWN
A4GYV4 Protein Ycf21.2e-0686.21Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
        G AS GNMLWGGGPAYGVKSIRSKKK +N
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
B1NWJ3 Protein Ycf28.5e-0889.66Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
        G AS GNMLWGGGPAYGVKSIRSKKK WN
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
Q14F97 Protein Ycf22.7e-0686.21Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
        G AS GNMLWGGGPAYGVKSIRSKKK  N
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
Q49KT6 Protein Ycf23.2e-0786.21Show/hide
Query:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
        G AS GNMLWGGGPAYG KSIRSKKK WN
Subjt:  GFASSGNMLWGGGPAYGVKSIRSKKKDWN
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.6e-0691.67Show/hide
Query:  SSGNMLWGGGPAYGVKSIRSKKKD
        S GNMLWGG PAYGVKSIRSKKKD
Subjt:  SSGNMLWGGGPAYGVKSIRSKKKD
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.6e-0691.67Show/hide
Query:  SSGNMLWGGGPAYGVKSIRSKKKD
        S GNMLWGG PAYGVKSIRSKKKD
Subjt:  SSGNMLWGGGPAYGVKSIRSKKKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTGCTTCTAGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAGGATTGGAATAATTTCCTGAAATAT
TTCCCATATAATGGGTCAGCGGCACAGCATCCCCGACTGTCAGCCGTTCATACAAATATCGGCTTGTTTCTAGCTTTGTCGTCTCGTAATCGATTGATTAGATTT
GGATTTTGTTTTCCGGACGACGTGTCGGCCGCCGATGTGCCACCAACATCCCAAACGCAGCCGCACCATTTTATTTCTAACCTTAAATTTCAATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTGCTTCTAGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAGGATTGGAATAATTTCCTGAAATAT
TTCCCATATAATGGGTCAGCGGCACAGCATCCCCGACTGTCAGCCGTTCATACAAATATCGGCTTGTTTCTAGCTTTGTCGTCTCGTAATCGATTGATTAGATTT
GGATTTTGTTTTCCGGACGACGTGTCGGCCGCCGATGTGCCACCAACATCCCAAACGCAGCCGCACCATTTTATTTCTAACCTTAAATTTCAATTCTAA
Protein sequenceShow/hide protein sequence
MGFASSGNMLWGGGPAYGVKSIRSKKKDWNNFLKYFPYNGSAAQHPRLSAVHTNIGLFLALSSRNRLIRFGFCFPDDVSAADVPPTSQTQPHHFISNLKFQF