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Clc08G05100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDUF4219 domain-containing protein
Genome locationClcChr08:15716706..15717185
RNA-Seq ExpressionClc08G05100
SyntenyClc08G05100
Gene Ontology termsNA
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD33270.1 TPA_asm: hypothetical protein HUJ06_012121 [Nelumbo nucifera]5.2e-3150Show/hide
Query:  NNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI------------------AVFGERKLA
        +NIC+DKL+G+NYSYW+LCMEA+LQ QDLWDLI+SD+ +IP D  +  E+R+KWK+KC K LF + +    E                    +F +R   
Subjt:  NNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI------------------AVFGERKLA

Query:  RTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
        R  QGN S+ +YFL I+TLCSEI ELD +E VS+A L  YL RGLR
Subjt:  RTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

KAA8540328.1 hypothetical protein F0562_024753 [Nyssa sinensis]3.9e-3451.25Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ IDKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+KC K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F E +LA  TQ N S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

KAA8549541.1 hypothetical protein F0562_001441 [Nyssa sinensis]6.6e-3450.62Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ +DKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+KC K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F E +LA  TQ N S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

KAA8549858.1 hypothetical protein F0562_001542 [Nyssa sinensis]7.0e-2846.88Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ +DKL+G+NYSY +LCMEA+LQ Q+LWDLIS DD +I +DT +NVE+R+KWK+K  K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F + +LA  TQ N S+ +YFL IKTLCSEI ELD +E VS+ARL RYL  GLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

RWR74934.1 Integrase, catalytic core [Cinnamomum micranthum f. kanehirae]3.1e-3146.25Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAV---------------------
        MN G+N+ IDKL+G+NY+YW+LCMEA+LQ QDLWDLIS D+ +IP+DT +N ++ +KWK+KC K LF + + +  +                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAV---------------------

Query:  -------FGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               + E +LA  TQG  S+ +YFL +KTLC+EI ELD +E VS+ARL RYL RGLR
Subjt:  -------FGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

TrEMBL top hitse value%identityAlignment
A0A1U8HD73 uncharacterized protein LOC1078767624.2e-2645.39Show/hide
Query:  IDKLIGDNYSYWRLCMEAFLQVQDLWDLI-SSDDLIPKDTLENVEVRKKWKVKCSKTLF-----------------VVHSEVYNEI-----------AVF
        I+KLIG NY YWR+CMEA+LQ QDLW+LI  +D +IP +T ENVE R+KWK+KC K LF                 V   EV++ +              
Subjt:  IDKLIGDNYSYWRLCMEAFLQVQDLWDLI-SSDDLIPKDTLENVEVRKKWKVKCSKTLF-----------------VVHSEVYNEI-----------AVF

Query:  GERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
         E +LA   QG  S+S YFL +K++C+EI E+D KE +S +RL RYL RGL+
Subjt:  GERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

A0A443N8T5 Integrase, catalytic core1.5e-3146.25Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAV---------------------
        MN G+N+ IDKL+G+NY+YW+LCMEA+LQ QDLWDLIS D+ +IP+DT +N ++ +KWK+KC K LF + + +  +                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAV---------------------

Query:  -------FGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               + E +LA  TQG  S+ +YFL +KTLC+EI ELD +E VS+ARL RYL RGLR
Subjt:  -------FGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

A0A5J5BCB3 Uncharacterized protein1.9e-3451.25Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ IDKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+KC K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F E +LA  TQ N S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

A0A5J5C3K7 Uncharacterized protein3.4e-2846.88Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ +DKL+G+NYSY +LCMEA+LQ Q+LWDLIS DD +I +DT +NVE+R+KWK+K  K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F + +LA  TQ N S+ +YFL IKTLCSEI ELD +E VS+ARL RYL  GLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

A0A5J5C7C2 DUF4219 domain-containing protein3.2e-3450.62Show/hide
Query:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------
        MN G+++ +DKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+KC K LF + + +  E                        
Subjt:  MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEI-----------------------

Query:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR
               F E +LA  TQ N S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Subjt:  -----AVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTATGGAAACAACATTTGTATAGACAAGCTTATCGGTGATAATTATAGCTACTGGAGGCTATGTATGGAAGCTTTTCTTCAAGTACAAGATTTGTGGGATCTTAT
TTCTAGTGATGATTTAATTCCAAAAGATACTCTGGAGAATGTTGAGGTGCGGAAAAAGTGGAAGGTCAAGTGTAGCAAGACTTTATTTGTTGTTCACTCAGAAGTATACA
ACGAGATTGCAGTATTTGGAGAACGAAAACTTGCTAGAACAACTCAAGGTAATTTTTCAGTTTCAAAATATTTTCTAATAATTAAAACTTTATGTTCAGAAATTAAAGAA
TTGGACAAAAAGGAGTTTGTTAGTAATGCTCGTTTGTGTCGTTATCTTACCCGTGGATTGCGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTATGGAAACAACATTTGTATAGACAAGCTTATCGGTGATAATTATAGCTACTGGAGGCTATGTATGGAAGCTTTTCTTCAAGTACAAGATTTGTGGGATCTTAT
TTCTAGTGATGATTTAATTCCAAAAGATACTCTGGAGAATGTTGAGGTGCGGAAAAAGTGGAAGGTCAAGTGTAGCAAGACTTTATTTGTTGTTCACTCAGAAGTATACA
ACGAGATTGCAGTATTTGGAGAACGAAAACTTGCTAGAACAACTCAAGGTAATTTTTCAGTTTCAAAATATTTTCTAATAATTAAAACTTTATGTTCAGAAATTAAAGAA
TTGGACAAAAAGGAGTTTGTTAGTAATGCTCGTTTGTGTCGTTATCTTACCCGTGGATTGCGAATGTAG
Protein sequenceShow/hide protein sequence
MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDDLIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKE
LDKKEFVSNARLCRYLTRGLRM