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Clc08G05240 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05240
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationClcChr08:16151252..16151572
RNA-Seq ExpressionClc08G05240
SyntenyClc08G05240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022941310.1 U-box domain-containing protein 30-like [Cucurbita moschata]7.4e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

XP_022981987.1 U-box domain-containing protein 30-like [Cucurbita maxima]7.4e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

XP_023524197.1 U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo]7.4e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

XP_038899078.1 U-box domain-containing protein 30-like isoform X1 [Benincasa hispida]5.7e-0431.2Show/hide
Query:  MQALWDDSITPKNTLHQLL------------------------------------------------------------------------AISHTIGFD
        MQ LWDDSITP NTLHQL+                                                                          SH +G +
Subjt:  MQALWDDSITPKNTLHQLL------------------------------------------------------------------------AISHTIGFD

Query:  AIGFLVNLDLDVQSRRNLVQPTRIS
        AIG LVNLDLD +SRRNLVQP +IS
Subjt:  AIGFLVNLDLDVQSRRNLVQPTRIS

XP_038899079.1 U-box domain-containing protein 30-like isoform X2 [Benincasa hispida]5.7e-0431.2Show/hide
Query:  MQALWDDSITPKNTLHQLL------------------------------------------------------------------------AISHTIGFD
        MQ LWDDSITP NTLHQL+                                                                          SH +G +
Subjt:  MQALWDDSITPKNTLHQLL------------------------------------------------------------------------AISHTIGFD

Query:  AIGFLVNLDLDVQSRRNLVQPTRIS
        AIG LVNLDLD +SRRNLVQP +IS
Subjt:  AIGFLVNLDLDVQSRRNLVQPTRIS

TrEMBL top hitse value%identityAlignment
A0A2C9U1C6 Uncharacterized protein7.3e-0545.9Show/hide
Query:  MQALWDDSITPKNTLHQLLAISHTIGF--------DAIGFLVNLDLDVQSRRNLVQPTRIS
        +Q LWDD+++PK TL QL+    +  +        +AIGFLVNLDLD+ SR   +QP +IS
Subjt:  MQALWDDSITPKNTLHQLLAISHTIGF--------DAIGFLVNLDLDVQSRRNLVQPTRIS

A0A6J1FA26 RING-type E3 ubiquitin transferase3.6e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

A0A6J1FKS4 RING-type E3 ubiquitin transferase3.6e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

A0A6J1INU1 RING-type E3 ubiquitin transferase3.6e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

A0A6J1IVG5 RING-type E3 ubiquitin transferase3.6e-0430.95Show/hide
Query:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF
        MQ LWDDSITP NTLHQL+                                                                           SH +G 
Subjt:  MQALWDDSITPKNTLHQLL-------------------------------------------------------------------------AISHTIGF

Query:  DAIGFLVNLDLDVQSRRNLVQPTRIS
        +AIG LVNLDLD +SRRNLVQP +IS
Subjt:  DAIGFLVNLDLDVQSRRNLVQPTRIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGA
TCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGA
AGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGA
TCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGA
AGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA
Protein sequenceShow/hide protein sequence
MQALWDDSITPKNTLHQLLAISHTIGFDAIGFLVNLDLDVQSRRNLVQPTRISCKLVIPLSLQDDLHRASLKLKKKSLVPIALVPFTYSLFFSPLLQSSKIELLTT