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Clc08G05250 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05250
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr08:16256056..16258064
RNA-Seq ExpressionClc08G05250
SyntenyClc08G05250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875107.1 nucleophosmin-like [Benincasa hispida]3.2e-1080.85Show/hide
Query:  ISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAIN
        +SIGR+IAS+QE IEELK+GQE IKKDI+EKYK+ILDILGHIKEAI+
Subjt:  ISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAIN

XP_038876482.1 glutamic acid-rich protein-like, partial [Benincasa hispida]4.9e-2777.32Show/hide
Query:  MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE
        M+IEKEKEGKQ+S GR+IAS+QE IEELK GQE IKKDI+EK+K+ILDILGHIKEAI+  L QK EGGEKQSQE LEKNKAPS SLELL ASL ++E
Subjt:  MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE

XP_038880505.1 glutamic acid-rich protein-like [Benincasa hispida]1.9e-2371.72Show/hide
Query:  MEIEKEKEGKQIS--IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE
        M+IEKEKEG++ +  IGR+IAS+QE IEELK+GQE IKKDI+EK+K+ILDILGHIKE+I+  LPQK    EKQSQE LEKNKAPS SLELLDASL ++E
Subjt:  MEIEKEKEGKQIS--IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE

XP_038885971.1 chromatin modification-related protein EAF7-like [Benincasa hispida]8.4e-1173.21Show/hide
Query:  MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEA
        M+IEKEK+GKQ+SI R+I S+QE IEELK+GQE IKKDI EK+K+ILDILG+IK+A
Subjt:  MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEA

XP_038891747.1 pescadillo homolog [Benincasa hispida]2.9e-1971.43Show/hide
Query:  IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE
        I   I      IEELK+GQE IKKDI+EK+K+ILDILGHIK+AI+  LPQK EGGEKQSQE LEKNKAPS SLELLDASL ++E
Subjt:  IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTGAAAAGGAAAAAGAAGGCAAACAAATATCAATTGGAAGAAAAATTGCTTCAATACAAGAAGAAATTGAAGAACTAAAAAAAGGACAAGAAGCCATTAAGAA
AGACATTCATGAAAAATACAAGAAGATTCTTGATATATTGGGCCACATAAAAGAAGCTATCAATGGTCTTCCACAAAAAGGAGAAGGTGGTGAAAAGCAATCTCAAGAAC
CTCTTGAGAAGAACAAAGCGCCATCACCTAGTTTGGAGCTTTTAGATGCAAGTTTGAACCTTATAGAGGTTGGAGGCAAAGAGGGTTGCTGGAAACCTACCAATTTATAG
mRNA sequenceShow/hide mRNA sequence
CTTGCCTTGGTTTATTGGGCTTTTGAGGTGATACTAAGACTATCCAACCCTACTATTGGATTTGCAAGAAGAATAAAAAGTGATGGACCAAGAATTGCTCAATGGGAATC
CTAAGAACCTAATGATTGGCGGCATCAACAATAATATCTTCAAAGCTGCTGGTAATTACAATCAACCTACTATGGGTATTTTGCGGAGCTGGCAACAAAGGAGATGGAGA
TTGAAAAGGAAAAAGAAGGCAAACAAATATCAATTGGAAGAAAAATTGCTTCAATACAAGAAGAAATTGAAGAACTAAAAAAAGGACAAGAAGCCATTAAGAAAGACATT
CATGAAAAATACAAGAAGATTCTTGATATATTGGGCCACATAAAAGAAGCTATCAATGGTCTTCCACAAAAAGGAGAAGGTGGTGAAAAGCAATCTCAAGAACCTCTTGA
GAAGAACAAAGCGCCATCACCTAGTTTGGAGCTTTTAGATGCAAGTTTGAACCTTATAGAGGTTGGAGGCAAAGAGGGTTGCTGGAAACCTACCAATTTATAGAGTTGGC
TGCCTAAAATTCTTTCCAAAATTGTT
Protein sequenceShow/hide protein sequence
MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAINGLPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIEVGGKEGCWKPTNL