; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G05380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionphotosystem II 22 kDa protein, chloroplastic
Genome locationClcChr08:16515874..16518786
RNA-Seq ExpressionClc08G05380
SyntenyClc08G05380
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0010196 - nonphotochemical quenching (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0019904 - protein domain specific binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150442.1 photosystem II 22 kDa protein, chloroplastic [Cucumis sativus]3.2e-13694.12Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
        MAAQTMLLTSGVC+ HG+ +  ELSLRPN  QFTR FFNPLPS+S+S P  GFTTLA+FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR

Query:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
        VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
Subjt:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN

Query:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

XP_008466710.1 PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo]2.7e-13593.38Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
        MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR

Query:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
        VAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
Subjt:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN

Query:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

XP_022952982.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata]1.6e-12786.91Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL
        MAAQTM+L+SGVC  HG+ +  E++     LRPNAQF+R FFNPLPS+S+S PA GF TLAIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNEL
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL

Query:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF
        FVGRVAMIGFAAS+LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK  RSALGLKEGGPLFGF
Subjt:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF

Query:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Subjt:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

XP_022991058.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]1.4e-12686.55Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL
        MAAQTM+L+SGVC  HG+ +  E++     LRPNAQ +R FFNPLPS+S+S PA GF TLAIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNEL
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL

Query:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF
        FVGRVAMIGFAAS+LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK  RSALGLKEGGPLFGF
Subjt:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF

Query:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Subjt:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

XP_038885143.1 photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]1.9e-13693.36Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRV
        MAAQTMLLTSGVC+ HG+ V  EL LRPNAQF+R FFNPLPS+S+S PA GFTTLA+FKSRTKAPPKKV KPKQKVEDGIFGTSGGIGFTKQNELFVGRV
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRV

Query:  AMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANE
        AMIGFAAS+LGEAITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK+FRSALGLKEGGPLFGFTKANE
Subjt:  AMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANE

Query:  LFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        LFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  LFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

TrEMBL top hitse value%identityAlignment
A0A0A0K7N4 Photosystem II protein1.6e-13694.12Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
        MAAQTMLLTSGVC+ HG+ +  ELSLRPN  QFTR FFNPLPS+S+S P  GFTTLA+FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR

Query:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
        VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
Subjt:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN

Query:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

A0A1S3CS23 photosystem II 22 kDa protein, chloroplastic1.3e-13593.38Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
        MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR

Query:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
        VAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
Subjt:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN

Query:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

A0A5A7UZ08 Photosystem II 22 kDa protein1.3e-13593.38Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
        MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGR

Query:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
        VAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN
Subjt:  VAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKAN

Query:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Subjt:  ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

A0A6J1GLX6 photosystem II 22 kDa protein, chloroplastic-like7.8e-12886.91Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL
        MAAQTM+L+SGVC  HG+ +  E++     LRPNAQF+R FFNPLPS+S+S PA GF TLAIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNEL
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL

Query:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF
        FVGRVAMIGFAAS+LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK  RSALGLKEGGPLFGF
Subjt:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF

Query:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Subjt:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

A0A6J1JV31 photosystem II 22 kDa protein, chloroplastic-like6.6e-12786.55Show/hide
Query:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL
        MAAQTM+L+SGVC  HG+ +  E++     LRPNAQ +R FFNPLPS+S+S PA GF TLAIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNEL
Subjt:  MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNEL

Query:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF
        FVGRVAMIGFAAS+LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK  RSALGLKEGGPLFGF
Subjt:  FVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGF

Query:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Subjt:  TKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

SwissProt top hitse value%identityAlignment
P54773 Photosystem II 22 kDa protein, chloroplastic4.3e-10775.9Show/hide
Query:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTTLAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQ
        AQTMLLT+   V LR    +   L  +P    +  F   LP      S + SS     TT+A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQ
Subjt:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTTLAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQ

Query:  NELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPL
        NELFVGRVAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGLE+AVIPPGKSF+SALGL EGGPL
Subjt:  NELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPL

Query:  FGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        FGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Subjt:  FGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

Q02060 Photosystem II 22 kDa protein, chloroplastic2.3e-10875.45Show/hide
Query:  AQTMLL-------TSGVCLRHGLVVNTEL-SLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNE
        AQ MLL       T+ + L+   ++  ++  ++P +  +  FF+PLPS+S SS +  F TLA+FKS+ KA PKKVEKPK KVEDG+FGTSGGIGFTK+NE
Subjt:  AQTMLL-------TSGVCLRHGLVVNTEL-SLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNE

Query:  LFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFG
        LFVGRVAMIGFAAS+LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+AVIPPGK  RSALGLK  GPLFG
Subjt:  LFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFG

Query:  FTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
        FTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E+++
Subjt:  FTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

Q9FPP4 Photosystem II 22 kDa protein, chloroplastic3.3e-10775.9Show/hide
Query:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTTLAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQ
        AQTMLLT+   V LR    +   L  +P    +  F   LP      + + SS     TT+A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQ
Subjt:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTTLAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQ

Query:  NELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPL
        NELFVGRVAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGLE+AVIPPGKSF+SALGL EGGPL
Subjt:  NELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPL

Query:  FGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        FGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Subjt:  FGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

Q9SMB4 Photosystem II 22 kDa protein, chloroplastic6.8e-10575.36Show/hide
Query:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPG-----FTTLAIFKSRTKAPPKK-VEKPKQKVEDGIFGTSGGIGFTKQNE
        AQTMLLT+   V LR    +   L  +P    + FF   LP    S+ A        TT+A+FKS+ KAP KK V KPK+KVEDGIFGTSGGIGFTKQNE
Subjt:  AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPG-----FTTLAIFKSRTKAPPKK-VEKPKQKVEDGIFGTSGGIGFTKQNE

Query:  LFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFG
        LFVGRVAMIGFAAS+LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL++AVIPPGK F+SALGL EGGPLF 
Subjt:  LFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFG

Query:  FTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGVPINEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Subjt:  FTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

Q9XF91 Photosystem II 22 kDa protein, chloroplastic4.0e-10576.12Show/hide
Query:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM
        AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAM
Subjt:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM

Query:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELF
        IGFAAS+LGEA+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RSALGLKE GPLFGFTKANELF
Subjt:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELF

Query:  VGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        VGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Subjt:  VGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

Arabidopsis top hitse value%identityAlignment
AT1G44575.1 Chlorophyll A-B binding family protein2.8e-10676.12Show/hide
Query:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM
        AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAM
Subjt:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM

Query:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELF
        IGFAAS+LGEA+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RSALGLKE GPLFGFTKANELF
Subjt:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELF

Query:  VGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD
        VGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Subjt:  VGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD

AT1G44575.2 Chlorophyll A-B binding family protein1.1e-6572.87Show/hide
Query:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM
        AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAM
Subjt:  AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAM

Query:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGG
        IGFAAS+LGEA+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RSALGLKE G
Subjt:  IGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTCAAACCATGCTACTCACTTCTGGTGTGTGCCTCCGCCATGGCCTGGTTGTCAACACAGAATTAAGCCTTAGACCTAACGCCCAATTTACTCGCTTCTTTTT
TAATCCTCTGCCTTCCAACTCTCTTTCTTCGCCGGCGCCTGGTTTCACCACTCTTGCTATCTTTAAATCTAGAACCAAAGCGCCGCCCAAGAAGGTTGAGAAGCCGAAGC
AGAAGGTTGAAGACGGCATTTTTGGGACCTCCGGTGGTATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTATATTG
GGAGAAGCCATCACCGGAAAGGGAATTCTCGCACAACTGAACTTGGAAACCGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCT
CGGAGCCATCGGAGCCCTAGGAGACCGAGGAAAATTCATCGACGATCCAGAACCGGCCACCGGATTGGAACGCGCCGTCATCCCTCCCGGAAAGAGCTTCAGATCGGCGC
TAGGTCTAAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAACTGTTCGTGGGAAGATTGGCGCAGCTAGGGTTTGCATTCTCGCTGATCGGAGAAATTATT
ACAGGAAAGGGAGCATTGGCGCAGTTGAATATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAA
TCCTGGAACTGGTAAATTCGTGACGGATGAGGAAGATGATGAATGA
mRNA sequenceShow/hide mRNA sequence
AAATATATTAATCAATCTTCTTAAAATTAAAAAAAAAATTGGGAAAAAGAAAAATGAAATGGCAATGGGCATAAATGAACCAGTTATTAAGGTTTAGGACAAAACAGAGG
AGTGTAGTCCAAAAGAAAAGCAATGAAAACAATTAAGCATCACATAAATTAAAGGAGGACGTGTCAGTCTATCCGCCGATCCTCAGACTCTCCCACCAAAAATCCTCAAA
AATCCCCTTCCCTTCACTTCCACCATACACTTAAAATCCCTTTCTTCTTCATCTTCTTAAAATCTCATCCAAATTAGTCTCTTCCCACTTGCTTAGCCTTTTTGTTTCCA
TTTCCATGGCGGCTCAAACCATGCTACTCACTTCTGGTGTGTGCCTCCGCCATGGCCTGGTTGTCAACACAGAATTAAGCCTTAGACCTAACGCCCAATTTACTCGCTTC
TTTTTTAATCCTCTGCCTTCCAACTCTCTTTCTTCGCCGGCGCCTGGTTTCACCACTCTTGCTATCTTTAAATCTAGAACCAAAGCGCCGCCCAAGAAGGTTGAGAAGCC
GAAGCAGAAGGTTGAAGACGGCATTTTTGGGACCTCCGGTGGTATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTA
TATTGGGAGAAGCCATCACCGGAAAGGGAATTCTCGCACAACTGAACTTGGAAACCGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACT
CTTCTCGGAGCCATCGGAGCCCTAGGAGACCGAGGAAAATTCATCGACGATCCAGAACCGGCCACCGGATTGGAACGCGCCGTCATCCCTCCCGGAAAGAGCTTCAGATC
GGCGCTAGGTCTAAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAACTGTTCGTGGGAAGATTGGCGCAGCTAGGGTTTGCATTCTCGCTGATCGGAGAAA
TTATTACAGGAAAGGGAGCATTGGCGCAGTTGAATATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCT
GTGAATCCTGGAACTGGTAAATTCGTGACGGATGAGGAAGATGATGAATGAAGAGATGGATTGTGGTTTAATTTTCTCTGTACATCAACTTAGCAAATCCAGGATTGTGC
TATTATAACTTGTTTATTCTGCTTCACCACTCAAAACAACCGAATCAAATTAACAAACTTTGCCTAGTGAAGTTTAGGAAATGTTACTCTTTTTCTTCTTTAGTCTGCTC
TTACTTAATTATTGAACTTCTTATAATTTTTATAATAGGTTAATAGTCATATGAAGAAATAATAAAATTATCTAACTAATATAATTTAATCAATTAGTTCAATTCATGGA
TATCAAAATAAAGAAAGAAATAAATAAAAAGCAAAACATGTTAGAGAGAGAAAGAACATAATCATCAAATCATAAATGTGAAGTTTAAATGTAATCGGCACAATAGGTCA
ATGAACAATGTGTTTAGTTTTGACAAAATATTAGAAATGTAGTTTCCTCCATCTAAGAAGTTTAAAGCTCTCATGAGCTTCAAGCATCATAAATGGAGCCTATGCCTTTC
TCAATTAAAAAAAAATACAAAGCTTAATTGTATGAGTTGTTTTCAAATATAGCAAAATGAACTAAACTATTTACAAATATAGCAAAATATCACTTTGATAGATAATGATA
GACACTAATAGACTAAGGGCTTGTTTGGGGTATTGTATTGGGTTACAAAACCCATGTTCGGGGAATGGGCTTTGGGGTTGGTTTTGTAATCCAAACCAACCCCAAAATCA
ATCCATTCCAATTCTTCCCCCCATCTGCTGATTATACCCGGTTTCCGACCCTTATCCAATGTTTT
Protein sequenceShow/hide protein sequence
MAAQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASIL
GEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEII
TGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE