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Clc08G05950 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G05950
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr08:17316312..17316716
RNA-Seq ExpressionClc08G05950
SyntenyClc08G05950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647204.1 hypothetical protein Csa_019006, partial [Cucumis sativus]2.3e-1264.29Show/hide
Query:  MDVVEPVLAEASNRAVQMAIGHKAPLK---SVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
        +D+VE  +AEASN AVQM +G+K   +   SVIPK+RKLVKTMMYHSIK F+ S FR   STA GTGAPP
Subjt:  MDVVEPVLAEASNRAVQMAIGHKAPLK---SVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
KAG6578934.1 hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sororia]2.5e-0650Show/hide
Query:  LITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
        +I GS P + VRP GES     P  AE +NR VQ         KSVIPK+R+LVKTMMYH++K+F+ S+FR   S     GAPP
Subjt:  LITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
KAG6578935.1 hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia]2.1e-0542.74Show/hide
Query:  KPQPIAQTIAPIPILVPPMVDLMEVD-------LITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVT
        KP+PI + I P+ I       +  V        +I GS P + VRP  ES     P +AE +NR VQ         KSVIPK+R+LVKTMMYHS+K+F+ 
Subjt:  KPQPIAQTIAPIPILVPPMVDLMEVD-------LITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVT

Query:  SLFRPPLSTAAGTGAPP
        S+FR   S     GAPP
Subjt:  SLFRPPLSTAAGTGAPP
KAG6602134.1 hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia]4.7e-0558.18Show/hide
Query:  EPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLST
        +P  A  S  +V+   G    +KSVIPK+RKLVKTMMYH IKDF+ SLFRPP  T
Subjt:  EPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLST
KGN47677.1 hypothetical protein Csa_018325 [Cucumis sativus]1.8e-1257.83Show/hide
Query:  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAA
        ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK MMY SIK+FV S F P + ++A
Subjt:  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAA
TrEMBL top hitse value%identityAlignment
A0A0A0KDQ7 Uncharacterized protein5.6e-0480Show/hide
Query:  LKSVIPKRRKLVKTMMYHSIKDFVTSLFRP
        +KSVIPK+RKLVKTM+YHS+KDF+ SLFRP
Subjt:  LKSVIPKRRKLVKTMMYHSIKDFVTSLFRP
A0A0A0KH01 Uncharacterized protein8.6e-1357.83Show/hide
Query:  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAA
        ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK MMY SIK+FV S F P + ++A
Subjt:  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAA
A0A6J1CJW3 uncharacterized protein LOC1110119631.9e-0451.56Show/hide
Query:  PVLAEASNRAVQMAIGHKA--PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
        PV+          AIG +A   +KSVIPKRR LVKTM+Y+ IKDF+ SLFRPP S       PP
Subjt:  PVLAEASNRAVQMAIGHKA--PLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGA
CCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAG
CAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCA
CTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA
mRNA sequenceShow/hide mRNA sequence
GGAAATCTTCTCAATTACCCAAAAATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCC
GATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGG
TGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCAC
TCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA
Protein sequenceShow/hide protein sequence
MGSRIWPLHNPVPLLPKPQPIAQTIAPIPILVPPMVDLMEVDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTS
LFRPPLSTAAGTGAPP