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Clc08G06540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G06540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr08:17986663..17986917
RNA-Seq ExpressionClc08G06540
SyntenyClc08G06540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058930.1 hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa]3.8e-1968.24Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-SDHQWPNDPVRKSPPPPF
        MGS KL  FIFS+LI LI LNL SKF AQN+HSPP     P PP NNKQ+T K W  L  PPSRP  SDHQWPN PVR SPPPPF
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-SDHQWPNDPVRKSPPPPF

KAG6607626.1 hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sororia]9.7e-1553.61Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITP-------------PPPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF
        MGS    PFI S+LI L+FL+L SKFTAQ+   PPAR I P               P NNKQY+V+S R L  PP  P  DHQWPN+ V KSPPPPF
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITP-------------PPPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF

KGN47469.1 hypothetical protein Csa_018822 [Cucumis sativus]2.1e-1762.92Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-----SDHQWPNDPVRKSPPPPF
        MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  PPSRP      SDHQWPN P+R SPPPPF
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-----SDHQWPNDPVRKSPPPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KF84 Uncharacterized protein1.0e-1762.92Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-----SDHQWPNDPVRKSPPPPF
        MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  PPSRP      SDHQWPN P+R SPPPPF
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-----SDHQWPNDPVRKSPPPPF

A0A0A0KI69 Uncharacterized protein5.7e-0539.22Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHS-----------PPARLITPP-------PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPP
        MG   L  ++FS+LI   FLNLPSK TA  +H            PP  L+ PP       PPP  KQ  +K    L  PP +     +WP     KSPPP
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHS-----------PPARLITPP-------PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPP

Query:  PF
        PF
Subjt:  PF

A0A5A7UW72 Uncharacterized protein6.4e-0438.24Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVH-----------SPPARLITPP-------PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPP
        MG   L  ++FS+LI   FLNLP+K TA  +H           +PP  L  PP       PPP  KQ  +K    L  PP       +WP     KSPPP
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVH-----------SPPARLITPP-------PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPP

Query:  PF
        PF
Subjt:  PF

A0A5D3DJG3 Uncharacterized protein1.8e-1968.24Show/hide
Query:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-SDHQWPNDPVRKSPPPPF
        MGS KL  FIFS+LI LI LNL SKF AQN+HSPP     P PP NNKQ+T K W  L  PPSRP  SDHQWPN PVR SPPPPF
Subjt:  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPE-SDHQWPNDPVRKSPPPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCG
GCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATG
ACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCG
GCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATG
ACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA
Protein sequenceShow/hide protein sequence
MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF