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Clc08G06550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G06550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionextensin-3-like
Genome locationClcChr08:17996207..17996963
RNA-Seq ExpressionClc08G06550
SyntenyClc08G06550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058946.1 extensin-3-like [Cucumis melo var. makuwa]1.3e-2562.9Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP
        MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP 
Subjt:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP

Query:  ASPLSVKKLYISQARHSVPPPPPK
          P   KKL++S AR + P PPP+
Subjt:  ASPLSVKKLYISQARHSVPPPPPK

KAA0058948.1 extensin-3-like [Cucumis melo var. makuwa]4.3e-2464.08Show/hide
Query:  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPP
        P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+  PP SYH  PPP  PL  KKLY+S+ R + PPPPPK+  P
Subjt:  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPP

Query:  YPW
        Y W
Subjt:  YPW

KAE8647164.1 hypothetical protein Csa_018816, partial [Cucumis sativus]1.3e-2560.45Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPL-QGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVI
        M LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F P P +KT +HT  PPPS P  Q L RPIVPY+P+KFPPPPSRK+   PPSYH  
Subjt:  MPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPL-QGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVI

Query:  PPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW
        PPPA  L  +KLY+S+ R + PPPPP +  PY W
Subjt:  PPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW

TYK10982.1 extensin-3-like [Cucumis melo var. makuwa]1.3e-2562.9Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP
        MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP 
Subjt:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP

Query:  ASPLSVKKLYISQARHSVPPPPPK
          P   KKL++S AR + P PPP+
Subjt:  ASPLSVKKLYISQARHSVPPPPPK

XP_008466986.1 PREDICTED: extensin-3-like, partial [Cucumis melo]4.1e-3569.47Show/hide
Query:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPP
        MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPP
Subjt:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPP

Query:  PSRKRPYPP-SYHVIPPPASPLSVKKLYISQ
        PSRK+  PP SYH  PPP  PL  KKLY+S+
Subjt:  PSRKRPYPP-SYHVIPPPASPLSVKKLYISQ

TrEMBL top hitse value%identityAlignment
A0A0A0KD80 Uncharacterized protein2.9e-3461.73Show/hide
Query:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPL-QGLGRPIVPYYPFKFPPP
        MES NP+FVFFL IIM LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F P P +KT +HT  PPPS P  Q L RPIVPY+P+KFPPP
Subjt:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPL-QGLGRPIVPYYPFKFPPP

Query:  PSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW-GWTIPRSPPPPF
        PSRK+   PPSYH  PPPA  L  +KLY+S+ R + PPPPP +  PY W    I +SPPPPF
Subjt:  PSRKRPY-PPSYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPW-GWTIPRSPPPPF

A0A1S3CSG8 extensin-3-like2.0e-3569.47Show/hide
Query:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPP
        MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPP
Subjt:  MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPP---TTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPP

Query:  PSRKRPYPP-SYHVIPPPASPLSVKKLYISQ
        PSRK+  PP SYH  PPP  PL  KKLY+S+
Subjt:  PSRKRPYPP-SYHVIPPPASPLSVKKLYISQ

A0A5A7UXN4 Extensin-3-like6.5e-2662.9Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP
        MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP 
Subjt:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP

Query:  ASPLSVKKLYISQARHSVPPPPPK
          P   KKL++S AR + P PPP+
Subjt:  ASPLSVKKLYISQARHSVPPPPPK

A0A5D3CI60 Extensin-3-like6.5e-2662.9Show/hide
Query:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP
        MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P S P + LGRPIVPYYP+KF PPP RK  + PP YHV PP 
Subjt:  MPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPY-PPSYHVIPPP

Query:  ASPLSVKKLYISQARHSVPPPPPK
          P   KKL++S AR + P PPP+
Subjt:  ASPLSVKKLYISQARHSVPPPPPK

A0A5D3CVI1 Extensin-3-like2.1e-2464.08Show/hide
Query:  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPP
        P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q L RPIVPYYP+KFPPPPSRK+  PP SYH  PPP  PL  KKLY+S+ R + PPPPPK+  P
Subjt:  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPP-SYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPP

Query:  YPW
        Y W
Subjt:  YPW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43150.1 Proline-rich extensin-like family protein2.1e-0538.93Show/hide
Query:  PSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP---SLPLQGLGRPIVPYYPFKFPPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARH
        P P      PPP   P  PYY +  PPPP K      S PPP   S P   +  P  PYY +  PPPP +  P P  YH  PPP         Y     H
Subjt:  PSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP---SLPLQGLGRPIVPYYPFKFPPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARH

Query:  SVPPPPPKEQPPYPWGWTIP----RSPPPPF
        S  PPPP + PP P+ +  P    +SPPPP+
Subjt:  SVPPPPPKEQPPYPWGWTIP----RSPPPPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCG
GTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGC
CACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTC
ATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTG
GACCATCCCTAGATCTCCCCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
CCACGTCAGCCAAGCTTGTAGTAATATTCTCCTTGGTTATTTGTATTCGTTTATTTGATTATTTGGCTTTATAATTGTGTGTATATATTGATCCTGCCATTCCTCTTTAT
TGTGTGAGGAAATAGTACAAATGAGCAATAATACTCCTTAGAGAACAATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTA
AATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATT
TCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTC
CACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCA
GTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAATACTATGTTTGTATATTTCTTGCGATTTA
ATTGTGGTTCAATTATCATTATCCCATGCATCAAGGGAGAATAAGTATTGAATGGCAACATTTCTTCTATACTTCTCCATCTTATTTTTTATTCCCC
Protein sequenceShow/hide protein sequence
MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPPSYHV
IPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPWGWTIPRSPPPPF