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Clc08G06590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G06590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionextensin-like
Genome locationClcChr08:18023680..18024074
RNA-Seq ExpressionClc08G06590
SyntenyClc08G06590
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058957.1 hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa]6.0e-1661Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF
        M F  LASYL  LL+AFF LNLP+KLTAH+IH SSS N + + AP   LPP PPIC+  A PPPA+KQ + K LP   PP PP   WP++FT KSPPPPF
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

KAG6578902.1 hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia]9.6e-0645.92Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF
        M  ++  SY   LL+ F SL LPSKLTA++IHP           P  PP P +  H A PPPA+K+Y+FK     PPP  P   WP +F  KSPPPP+
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

TYK29731.1 hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]1.6e-1345Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPP-----------------------PAEKQYEFKPLP----
        M FV+LASYL FLL AFFSLNLPSKLTAH+IHPSS     ++K P LP    +C + APPP                       PA+K+Y+FKP P    
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPP-----------------------PAEKQYEFKPLP----

Query:  ----LTPPPL-----------PPKSTWPQKFTAKSPPPPF
               PPL           PPK +WP+KF   SPPPPF
Subjt:  ----LTPPPL-----------PPKSTWPQKFTAKSPPPPF

XP_022993352.1 extensin-like [Cucurbita maxima]2.8e-0546.23Show/hide
Query:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAK
        M  ++LAS YL  LL+A  SL+LPSKL A  +HPS   N H+++ P      +LP P P +C   APPPP + +++FK  P  P  +PP   W +KFT  
Subjt:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAK

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]1.0e-0746.53Show/hide
Query:  YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPP
        YL  LL+A  SL+LPSKL A  +HPS   N H+++ P          +LP P P +C   APPPP + +++FKP P  P P+P    W +KFT KSPPPP
Subjt:  YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPP

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein5.3e-1863Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLP--PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF
        M F  LASYL  LL+AFF LNLPSKLTAH+IH SSS N +++  P LP  P PPIC+  A PPPA+KQ + KPLP   PP PPK  WP++FT KSPPPPF
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLP--PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

A0A5A7UW72 Uncharacterized protein2.9e-1661Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF
        M F  LASYL  LL+AFF LNLP+KLTAH+IH SSS N + + AP   LPP PPIC+  A PPPA+KQ + K LP   PP PP   WP++FT KSPPPPF
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP--RLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

A0A5D3E2A1 Uncharacterized protein7.9e-1445Show/hide
Query:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPP-----------------------PAEKQYEFKPLP----
        M FV+LASYL FLL AFFSLNLPSKLTAH+IHPSS     ++K P LP    +C + APPP                       PA+K+Y+FKP P    
Subjt:  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPP-----------------------PAEKQYEFKPLP----

Query:  ----LTPPPL-----------PPKSTWPQKFTAKSPPPPF
               PPL           PPK +WP+KF   SPPPPF
Subjt:  ----LTPPPL-----------PPKSTWPQKFTAKSPPPPF

A0A6J1FFZ9 extensin-like5.1e-0544.14Show/hide
Query:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP-PSPPICKHAAPPPPAEK-QYEFKPLPLTPPPLPPKSTWPQ
        M  ++L+S YL  LL+A  SL+LPSKL A  +HPS   N H+++ P          +LP P P +C   APPPP  K +++FK  P  P  +PP   W +
Subjt:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP----------RLP-PSPPICKHAAPPPPAEK-QYEFKPLPLTPPPLPPKSTWPQ

Query:  KFTAKSPPPPF
        KFT  SPPPPF
Subjt:  KFTAKSPPPPF

A0A6J1JSJ5 extensin-like1.4e-0546.23Show/hide
Query:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAK
        M  ++LAS YL  LL+A  SL+LPSKL A  +HPS   N H+++ P      +LP P P +C   APPPP + +++FK  P  P  +PP   W +KFT  
Subjt:  MRFVVLAS-YLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAP------RLP-PSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAK

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCAT
CAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCAT
TGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TTGAAAGAGAACAATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACC
CATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTC
AAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAACACACTACTAGTTTGTTATG
GATATCAGGATGGTAAAATTAATTAGCTTTGTTATTTTTCTTTTATGAAATAATAATAATAATAA
Protein sequenceShow/hide protein sequence
MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF