CuGenDBv2

Gene ID	Clc08G06920
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	WD repeat protein
Genome location	ClcChr08:18433965..18437244
RNA-Seq Expression	Clc08G06920
Synteny	Clc08G06920
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140944.1 uncharacterized protein LOC101218374 [Cucumis sativus]

1.7e-97

94.21

Show/hide

Query:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSESEIREVEET S SELQPL+E+ NPSSNSK+VKTKVPE+EIHL+RQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLS+DSQGWMKK NITGNFPPWILACVVIVFTRSRKRT+DLLKKY
Subjt:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

XP_008456707.1 PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo]

9.0e-99

95.79

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Query:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSE+EIREV+ET S SELQPL+E+QNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLS+DSQGWMKK NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

XP_022990468.1 uncharacterized protein LOC111487320 [Cucurbita maxima]

1.5e-93

91.58

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Query:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR
        QSESEIRE+EET SNSELQPL++SQNPSSNS+TVKTKVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQLEVR+ILDKYGFKSVFAFKPDSGRGVPIRFNPR
Subjt:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR

Query:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        NGRSILTYRDGAEI+IDGEPKDSLIKPVTRI+F VAIITILIT L  S++SQGWMKK NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

XP_023518857.1 uncharacterized protein LOC111782248 [Cucurbita pepo subsp. pepo]

2.2e-92

90.53

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Query:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR
        QSESEIRE+EET SNSELQPL++S N SSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQLEVR+ILDKYGFKSVFAFKPDSGRGVPIRFNPR
Subjt:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR

Query:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        NGRSILTYRDGAEI+IDGEPKDSLIKPVTRI+F VAIITI+IT L  S++SQGWMKK NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

XP_038884244.1 uncharacterized protein LOC120075142 [Benincasa hispida]

7.6e-98

94.21

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Query:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSESEIREVE+T S SELQPL+ESQNP+ NSK V+TKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDIL+KYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVA+ITILITFLS+DSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9G4 Uncharacterized protein

8.2e-98

94.21

Show/hide

Query:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSESEIREVEET S SELQPL+E+ NPSSNSK+VKTKVPE+EIHL+RQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLS+DSQGWMKK NITGNFPPWILACVVIVFTRSRKRT+DLLKKY
Subjt:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

A0A1S3C3V7 uncharacterized protein LOC103496571

4.4e-99

95.79

Show/hide

Query:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
        MDQSE+EIREV+ET S SELQPL+E+QNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN
Subjt:  MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFN

Query:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLS+DSQGWMKK NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  PRNGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

A0A6J1BYH2 uncharacterized protein LOC111006735

1.5e-91

88.3

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Query:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR
        Q+ESEIRE+EET SNSE QPL++SQNPSS+SK VKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLE+R+ILDKYGFKS FAFKP++GRGVPIRFNPR
Subjt:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR

Query:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        NGRSILTYRDGAEI+IDGEPKDSLIKP+TRIIFGVAI+TILITFLS++SQG MKK NI+GNFPPWILACVVIVFTRSRKRTRDLLKK+
Subjt:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

A0A6J1HAT7 uncharacterized protein LOC111461110

1.5e-91

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Query:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR
        QSESEIRE+EET SNSELQPL++SQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQLEVR+ILDKYGFKSVFAFKPDSGRGVPIRFNPR
Subjt:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR

Query:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        NGRSILTYR GAEI+IDGEPKDSLIKPVT I+F VAIITI+IT L  S+ SQGWMK  NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

A0A6J1JTD1 uncharacterized protein LOC111487320

7.2e-94

91.58

Show/hide

Query:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR
        QSESEIRE+EET SNSELQPL++SQNPSSNS+TVKTKVPEVEIHLYRQGKGPIDVFKSSLGGW+QDQLEVR+ILDKYGFKSVFAFKPDSGRGVPIRFNPR
Subjt:  QSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPR

Query:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        NGRSILTYRDGAEI+IDGEPKDSLIKPVTRI+F VAIITILIT L  S++SQGWMKK NITGNFPPWILACVVIVFTRSRKRTRDLLKKY
Subjt:  NGRSILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFL--SQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71780.1 unknown protein

2.2e-66

64.67

Show/hide

Query:  REVEETCSNSELQPLIESQNPSS--NSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRS
        +E+EET       PL+E+  P S   S T   KVPEVEIHLY+ GKGPIDVFKS+LGG++QDQLEVR IL+KYG K++FAF  + GR VPIRF+PRNGRS
Subjt:  REVEETCSNSELQPLIESQNPSS--NSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRS

Query:  ILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY
        +L YRDGA I+IDGEP+DSL+KP+TRII GV I+T+LITFL +D   W+K     G FPPW+LAC+VIVFTR+RKRTRD  KKY
Subjt:  ILTYRDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATCAGAGCGAGAGCGAAATCCGAGAAGTTGAAGAAACATGCTCGAACTCGGAGCTGCAACCTCTGATCGAGAGCCAGAATCCGAGTTCGAACTCCAAAACTGTGAA
GACGAAGGTTCCGGAGGTCGAAATCCATCTTTATCGCCAGGGCAAAGGTCCGATTGATGTGTTTAAATCAAGCCTTGGGGGTTGGGATCAAGACCAACTTGAGGTCCGAG
ATATTCTGGACAAATACGGGTTCAAGTCCGTATTCGCCTTTAAACCTGACTCCGGTCGTGGCGTTCCGATTCGATTCAACCCTAGAAATGGCAGGTCTATTCTGACTTAC
AGAGATGGAGCCGAAATTTTCATTGACGGAGAGCCTAAGGATTCCCTTATCAAACCAGTAACCAGGATCATTTTTGGCGTGGCAATTATAACCATTTTGATAACGTTTCT
CTCTCAAGACTCACAAGGGTGGATGAAGAAATTTAATATCACCGGGAACTTCCCTCCTTGGATTCTAGCTTGTGTCGTTATCGTTTTTACGCGCTCAAGGAAAAGAACTA
GGGACTTGCTTAAAAAGTACGATAAACAGCCTCTGTTTACTGGGCTGAAAAGTGGACATGTTTGA

mRNA sequence

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Protein sequence

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MDQSESEIREVEETCSNSELQPLIESQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTY
RDGAEIFIDGEPKDSLIKPVTRIIFGVAIITILITFLSQDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRTRDLLKKYDKQPLFTGLKSGHV

Clc08G06920 (gene) of Watermelon (cordophanus) v2 genome