; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G07720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G07720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationClcChr08:19297950..19299386
RNA-Seq ExpressionClc08G07720
SyntenyClc08G07720
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB99107.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis]2.3e-2380.88Show/hide
Query:  ERDRRQRRRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        +R R +R +     KMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTH+
Subjt:  ERDRRQRRRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

KAF7031339.1 hypothetical protein CFC21_042683 [Triticum aestivum]1.7e-2372.37Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLLYHVQPDRR
        MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+ +    ++  +  +L +  P RR
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLLYHVQPDRR

KHG22319.1 hypothetical protein F383_04492 [Gossypium arboreum]7.8e-2480.88Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV + +S  L
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLL

RDX74585.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Mucuna pruriens]3.7e-2693.55Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQ
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV +
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQ

VAH65405.1 unnamed protein product [Triticum turgidum subsp. durum]2.7e-2488.52Show/hide
Query:  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        +R G  +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

TrEMBL top hitse value%identityAlignment
A0A0B0PD08 Uncharacterized protein3.8e-2480.88Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV + +S  L
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLL

A0A371F8G5 DNA-directed RNA polymerase subunit 10-like protein (Fragment)1.8e-2693.55Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQ
        MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV +
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQ

A0A446NTG8 Uncharacterized protein1.3e-2488.52Show/hide
Query:  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        +R G  +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

A0A453FTM1 Uncharacterized protein2.2e-2491.38Show/hide
Query:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

M8D4I9 DNA-directed RNA polymerases I, II, and III subunit RPABC52.2e-2491.38Show/hide
Query:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC54.9e-2179.25Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ H+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC52.3e-2390.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc52.9e-2184.91Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+TH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 102.3e-2390.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein4.7e-2490.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.7e-2490.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL

AT1G61700.1 RNA polymerases N / 8 kDa subunit3.4e-2590.57Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGATAGGTCAAAGCCCAATGAAAAAAGACTTCAAAAAAGGTAAACGTAAACCTTTAAGAATCCTCGAAGGTGAAATTGGGGTAGCGTCGGTATCGGAGGTGGTTGA
GCAGAAAACTCCCAAAACCCTAGAACGTGATCGGAGGCAGCGTCGGAGGGCGGGGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTG
GAAACAAATGGGATCATTACCTTGATCTTCTTCAGGCAGACTATTCAGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACT
CATCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTATCACGTGCAGCCAGATCGACGTTTGTATGGTGTTTGCGTTCAGTTAACAGAAAAGAA
AAACTACAGGAATGTTCAGTGCATTGCAGGACTCGAGTTAAGCTATGTCTTGGCGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGATAGGTCAAAGCCCAATGAAAAAAGACTTCAAAAAAGGTAAACGTAAACCTTTAAGAATCCTCGAAGGTGAAATTGGGGTAGCGTCGGTATCGGAGGTGGTTGA
GCAGAAAACTCCCAAAACCCTAGAACGTGATCGGAGGCAGCGTCGGAGGGCGGGGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTG
GAAACAAATGGGATCATTACCTTGATCTTCTTCAGGCAGACTATTCAGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACT
CATCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTATCACGTGCAGCCAGATCGACGTTTGTATGGTGTTTGCGTTCAGTTAACAGAAAAGAA
AAACTACAGGAATGTTCAGTGCATTGCAGGACTCGAGTTAAGCTATGTCTTGGCGTTCTAGTTTATTTACTTATTGACTCATGCGAACCCAAGTATTTAATCAGTATTTA
ATCTTGTGTTTATTAGTATTTAGGAGTTGTATATCAGAGCCTTGTACTATTTTCCATAGGATGTAGTTACTGATTTCCGTTTGGTCAGTATTGATGTTTTTATGGTGTTT
GCATCCAGTTAAGAGAAAAGAAAAACTATAGGAATATTCAGTGCAGGACTTGAGTTAAGCTATATCTTGGTGTCCCAGTTATTTTACTTATTGATTCATACGAACCCAAG
TATTTAATCTTCTTTGTGTTTATTAGTGTTTAGGATTTATATATCAGAGCCATGTACCACTTTCATAGGATGTAGTTACTTACTGACTTCTGTTCAGTCAGTATTGATGT
TTCTATGGTGTTTGCATCCAGTTAAG
Protein sequenceShow/hide protein sequence
MLIGQSPMKKDFKKGKRKPLRILEGEIGVASVSEVVEQKTPKTLERDRRQRRRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMT
HLWISLIPVSQGTSFLLYHVQPDRRLYGVCVQLTEKKNYRNVQCIAGLELSYVLAF