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Clc08G08360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G08360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSHSP domain-containing protein
Genome locationClcChr08:19857010..19857574
RNA-Seq ExpressionClc08G08360
SyntenyClc08G08360
Gene Ontology termsNA
InterPro domainsIPR002068 - Alpha crystallin/Hsp20 domain
IPR008978 - HSP20-like chaperone


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646641.1 hypothetical protein Csa_005322 [Cucumis sativus]4.9e-2567.78Show/hide
Query:  QFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        QFFP   +EE EE N+ S SM LPGFSKDRLRINLNTRTR ++VTGQKSDGLFNI RLNER+ I E C L+GV AKL N+ L +TF K +
Subjt:  QFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR

KAG6602241.1 hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia]2.5e-0840.23Show/hide
Query:  PDKRWEEDEENNQMSLSMVL--PGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK
        P+  W+E +E N+    M++   G S+++L+I+++   RT+ +   K +G +NI R+NE I I   CSLD V+A  +NN+L ITFPK
Subjt:  PDKRWEEDEENNQMSLSMVL--PGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK

KAG7016359.1 hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2059.55Show/hide
Query:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        F PD +W E+E +    LSM LPGF K+RL+I LN  TRTL VTGQK DGLFNI+RLNERI I++ CSLDGV A+L ++ L++TF K +
Subjt:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR

XP_018475449.1 PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Raphanus sativus]7.4e-0531.58Show/hide
Query:  GGGLKQFQFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK
        G G++   F P   W++  E   +++   LPGF+K+++++     +R + VTG++  G     R NE   + + C +D +H  L NN L IT PK
Subjt:  GGGLKQFQFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK

XP_022939359.1 uncharacterized protein LOC111445297 [Cucurbita moschata]1.8e-1958.43Show/hide
Query:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        F PD +W E+E +    LSM LPGF K++L+I LN  TRTL VTGQK DGLFNI+RLNERI I++ CSLDGV A+L +  L++TF K +
Subjt:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR

TrEMBL top hitse value%identityAlignment
A0A067ECS7 SHSP domain-containing protein4.0e-0435.63Show/hide
Query:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK
        F P   W ++ ENN   L + LP F+K+++RI     +R + VTG++  G     R N+   I   C +D +HAK  N  L +T PK
Subjt:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK

A0A0A0KB53 SHSP domain-containing protein2.4e-2567.78Show/hide
Query:  QFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        QFFP   +EE EE N+ S SM LPGFSKDRLRINLNTRTR ++VTGQKSDGLFNI RLNER+ I E C L+GV AKL N+ L +TF K +
Subjt:  QFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR

A0A6J0MTF1 inactive protein RESTRICTED TEV MOVEMENT 2-like3.6e-0531.58Show/hide
Query:  GGGLKQFQFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK
        G G++   F P   W++  E   +++   LPGF+K+++++     +R + VTG++  G     R NE   + + C +D +H  L NN L IT PK
Subjt:  GGGLKQFQFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK

A0A6J1FGX8 uncharacterized protein LOC1114452978.8e-2058.43Show/hide
Query:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        F PD +W E+E +    LSM LPGF K++L+I LN  TRTL VTGQK DGLFNI+RLNERI I++ CSLDGV A+L +  L++TF K +
Subjt:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR

V4VZG1 SHSP domain-containing protein4.0e-0435.63Show/hide
Query:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK
        F P   W ++ ENN   L + LP F+K+++RI     +R + VTG++  G     R N+   I   C +D +HAK  N  L +T PK
Subjt:  FFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G27670.1 heat shock protein 217.9e-0526.67Show/hide
Query:  WEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQK----SDGLF---NIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
        W+  EE +++ +   +PG SK+ ++I++      L++ G++    SD  +   ++     R+Q+ + C  D + A+L N  L+IT PK +
Subjt:  WEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQK----SDGLF---NIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTTCTCTCTTGCATATACAAACACCCAAAGCTATACCCTTCTAATTCATTCTTTGGTGGTGGATTGAAGCAATTTCAATTTTTTCCAGATAAAAGATGGGAGGA
AGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGAC
AAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTAT
ATTACATTTCCCAAAAACAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTTCTCTCTTGCATATACAAACACCCAAAGCTATACCCTTCTAATTCATTCTTTGGTGGTGGATTGAAGCAATTTCAATTTTTTCCAGATAAAAGATGGGAGGA
AGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGAC
AAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTAT
ATTACATTTCCCAAAAACAGATAA
Protein sequenceShow/hide protein sequence
MLLLSCIYKHPKLYPSNSFFGGGLKQFQFFPDKRWEEDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLY
ITFPKNR