; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G08880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G08880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor PRE6-like
Genome locationClcChr08:20322166..20323469
RNA-Seq ExpressionClc08G08880
SyntenyClc08G08880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]4.5e-2859.72Show/hide
Query:  MSTRRSSRSRNSSGA-PLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV
        MS+RRSSRSRNS+ A PLIS+DQI+DLVSKLQRLIPELRNPR SHK                                                 SAS+V
Subjt:  MSTRRSSRSRNSSGA-PLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV

Query:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]1.2e-2860.42Show/hide
Query:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV
        MS+RRSSRSRNSS  +PLIS+DQI+DLVSKLQRLIPELRNPR SHK                                                VSAS+V
Subjt:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV

Query:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]8.4e-2761.54Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSRNSSGA  IS+DQISDLVSKLQRLIPE+RN R SHK                                                VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]1.9e-2660.84Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSRN+SGA  IS+DQISDLVSKLQRLIPE+RN R SHK                                                VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]8.7e-3263.64Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSRNSSGAPLIS+DQISDLVSKLQRLIPELRNPR SHK                                                VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        QETCNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein2.2e-2859.72Show/hide
Query:  MSTRRSSRSRNSSGA-PLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV
        MS+RRSSRSRNS+ A PLIS+DQI+DLVSKLQRLIPELRNPR SHK                                                 SAS+V
Subjt:  MSTRRSSRSRNSSGA-PLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV

Query:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A1S3CPL2 transcription factor PRE6-like5.7e-2960.42Show/hide
Query:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV
        MS+RRSSRSRNSS  +PLIS+DQI+DLVSKLQRLIPELRNPR SHK                                                VSAS+V
Subjt:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV

Query:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like5.7e-2960.42Show/hide
Query:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV
        MS+RRSSRSRNSS  +PLIS+DQI+DLVSKLQRLIPELRNPR SHK                                                VSAS+V
Subjt:  MSTRRSSRSRNSS-GAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKV

Query:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Subjt:  LQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like4.1e-2761.54Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSRNSSGA  IS+DQISDLVSKLQRLIPE+RN R SHK                                                VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like4.1e-2761.54Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSRNSSGA  IS+DQISDLVSKLQRLIPE+RN R SHK                                                VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

SwissProt top hitse value%identityAlignment
Q8GW32 Transcription factor PRE61.7e-2253.19Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSR  SG+  IS+DQISDLVSKLQ LIPELR  R+     DK                                            VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        QETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9CA64 Transcription factor PRE31.1e-1847.52Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS RR SRSR SSG   ISEDQI+DL+ KLQ+L+PELR+ R S K                                                VSA++VL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        Q+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Q9FLE9 Transcription factor PRE12.2e-1744.12Show/hide
Query:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI
        RSR SS AP IS++Q+ DLVSKL++++PE+   R S K                                                 SASKVLQETCNYI
Subjt:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI

Query:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        RNL+REVD+LSERLSQLL + + DS EAA+IRSL M
Subjt:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q9LJX1 Transcription factor PRE58.2e-1743.38Show/hide
Query:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI
        RSR +S A  IS+DQ+ DLVSKL++ +PE+   R S K                                                VSASKVLQETCNYI
Subjt:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI

Query:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        R LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Q9LXG5 Transcription factor PRE21.6e-1541.18Show/hide
Query:  SSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCN
        S RSR +S +  IS+DQI+DL+SKL++ IPE+R  R S+                                                TVSASKVLQETCN
Subjt:  SSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCN

Query:  YIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        YIRNL++E DDLS+RL+QLL + + +S +AA+IRSL
Subjt:  YIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.2e-2353.19Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS+RRSSRSR  SG+  IS+DQISDLVSKLQ LIPELR  R+     DK                                            VSASKVL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        QETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 18.1e-2047.52Show/hide
Query:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL
        MS RR SRSR SSG   ISEDQI+DL+ KLQ+L+PELR+ R S K                                                VSA++VL
Subjt:  MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVL

Query:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL
        Q+TCNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Subjt:  QETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.8e-1843.38Show/hide
Query:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI
        RSR +S A  IS+DQ+ DLVSKL++ +PE+   R S K                                                VSASKVLQETCNYI
Subjt:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI

Query:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        R LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Subjt:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT3G47710.1 BANQUO 31.1e-1644.6Show/hide
Query:  RSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETC
        R SRSR  +GA +I+++QI+DLV +L RL+PEL N R S K                                                VSAS+VLQETC
Subjt:  RSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETC

Query:  NYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        +YIRNL +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Subjt:  NYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.5e-1844.12Show/hide
Query:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI
        RSR SS AP IS++Q+ DLVSKL++++PE+   R S K                                                 SASKVLQETCNYI
Subjt:  RSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCNYI

Query:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
        RNL+REVD+LSERLSQLL + + DS EAA+IRSL M
Subjt:  RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGAGGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCC
GAGCTTCGTAATCCCCGCACTTCCCACAAGCAGCAGGACAAAGTCTTCCAATTAAACCTTATTAATTTCTCTCTCCCCACATGTCGGCTTGTGGGTCTCCTATTG
TTCCCTCCTTCCACTGCCATTGCAGCTGTTTCAAAATCTATCCGCTCTTCATACACTCACATTGTGACCGTGTCCGCTTCAAAAGTGTTACAAGAAACATGCAAT
TACATAAGGAATTTGCATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAACTTTTGGCAGCAACAGAAAACGACAGCGCTGAAGCTGCGATTATTAGGAGT
TTATTCATGTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAGGAAGCCAAAATCGCCCACTGGTTTTTCCCATGCAGTTGTCCGTTTGAAGGGCAGCAAAAGAGGAAACCCTTCTCTCTATTATCTCTCTCTTTCTCTCTC
TCTCTCTCTCTTATCTATCTCTTGTCTCCCTAAAACAGTATATATACACCTTCTCCCCATATCTCTCTCCCTTCATCCCCATAACCTCCTCGTTTTCTCTCTCCC
TTTCGTCCCTAAAACTTAATTCCACCCTTTCCAAATTAAAATAAAATATTATAATTAAAATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTC
CATTAATCTCTGAGGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCCGAGCTTCGTAATCCCCGCACTTCCCACAAGCAGCAGGACAAAGTCT
TCCAATTAAACCTTATTAATTTCTCTCTCCCCACATGTCGGCTTGTGGGTCTCCTATTGTTCCCTCCTTCCACTGCCATTGCAGCTGTTTCAAAATCTATCCGCT
CTTCATACACTCACATTGTGACCGTGTCCGCTTCAAAAGTGTTACAAGAAACATGCAATTACATAAGGAATTTGCATAGAGAGGTGGATGATTTAAGTGAGCGAT
TGTCGCAACTTTTGGCAGCAACAGAAAACGACAGCGCTGAAGCTGCGATTATTAGGAGTTTATTCATGTAAAACCCTATAATTTATCTATAACAAATTTCCCTAC
CTGTTACCACGTCGTTTCCTTTCTTATTTTTCATTTTCTCTCTTGATATATATTTATATATATGTGTATGATAGTTAAATTATTTAGCTAGGGCTTCTTTGGCCG
ATGTATTAGGCCAAGTAAACAGAAGGGTGTTATATTTATATATATATATAACACCTCTTTTGAGCAGAGTTTGTAGTACTTTGACTTTTATAATATTCTATGAAC
CAAAGTTCTTTCC
Protein sequenceShow/hide protein sequence
MSTRRSSRSRNSSGAPLISEDQISDLVSKLQRLIPELRNPRTSHKQQDKVFQLNLINFSLPTCRLVGLLLFPPSTAIAAVSKSIRSSYTHIVTVSASKVLQETCN
YIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM