; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G09360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G09360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding protein 24-A
Genome locationClcChr08:20794986..20798914
RNA-Seq ExpressionClc08G09360
SyntenyClc08G09360
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045404.1 RNA-binding protein 24-A [Cucumis melo var. makuwa]9.9e-15598.2Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPPIS+  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

KAG6599081.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]3.5e-15296.38Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY
        RANCNLASLGRPRPPISYGRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+P IY
Subjt:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY

Query:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        HYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Subjt:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

XP_004146763.1 RNA-binding protein 24-A [Cucumis sativus]5.8e-15598.2Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPP+SY  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

XP_008464801.1 PREDICTED: RNA-binding protein 24-A [Cucumis melo]9.9e-15598.2Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPPIS+  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

XP_022946505.1 RNA-binding protein 24-A [Cucurbita moschata]3.5e-15296.38Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY
        RANCNLASLGRPRPPISYGRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+P IY
Subjt:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY

Query:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        HYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Subjt:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

TrEMBL top hitse value%identityAlignment
A0A0A0KHA9 RRM domain-containing protein1.8e-15498.19Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPP+SY  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ

A0A1S3CME8 RNA-binding protein 24-A4.8e-15598.2Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPPIS+  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

A0A5D3CHF9 RNA-binding protein 24-A4.8e-15598.2Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT
        RANCNLASLGRPRPPIS+  GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+PT
Subjt:  RANCNLASLGRPRPPISY--GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPT

Query:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Subjt:  IYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

A0A6J1G3W1 RNA-binding protein 24-A1.7e-15296.38Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY
        RANCNLASLGRPRPPISYGRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+P IY
Subjt:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY

Query:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        HYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Subjt:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

A0A6J1KGG8 RNA-binding protein 24-A3.2e-15195.29Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY
        RANCNLASLGRPRPPISYGRLR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSA+P IY
Subjt:  RANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIY

Query:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
        HYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Subjt:  HYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG

SwissProt top hitse value%identityAlignment
D3Z4I3 RNA-binding protein 245.7e-2839.09Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+ QP   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY

Query:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTV-PGGHGYGAVHGYA
         G  Q +       FG   P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A      Y Q      P   GY    GY+
Subjt:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTV-PGGHGYGAVHGYA

Query:  MPSPQILQFSGPNVNALTSS
            Q +  + P   A  ++
Subjt:  MPSPQILQFSGPNVNALTSS

Q5ZMA3 RNA-binding protein 242.8e-2738.36Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+ QP   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY

Query:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAM
         G  Q +       FG   P  Y Y Q    P    P+           P  GY      QY        SA    Y       +     GY A  GY  
Subjt:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAM

Query:  PSPQILQFSGPNVNALTSS
           Q +  + P   A  ++
Subjt:  PSPQILQFSGPNVNALTSS

Q6GQD3 RNA-binding protein 24-A8.7e-2939.07Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+ QP   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY

Query:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQ
         G  Q +       FG   P  Y Y Q    P        P        Y  +    Y Q      +A    Y Y       P   GY    GY    PQ
Subjt:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQ

Query:  ILQFSGPNVNALTSS
         L  + P   A  ++
Subjt:  ILQFSGPNVNALTSS

Q9BX46 RNA-binding protein 243.3e-2839.55Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY
        DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+ QP   
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVY

Query:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTV-PGGHGYGAVHGYA
         G  Q +       FG   P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A      Y Q      P   GY    GY 
Subjt:  VGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTV-PGGHGYGAVHGYA

Query:  MPSPQILQFSGPNVNALTSS
            Q +  + P   A  ++
Subjt:  MPSPQILQFSGPNVNALTSS

Q9M1S3 Probable RNA-binding protein ARP11.8e-2937.63Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI
        ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYGFVTF+D ++A RAC D TPII+GRRANCNLASLG      
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGRLRQPAVYVGGMQ-PNRG-----AYIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQ
          GRLR+        Q P  G      ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG        V G+     Y  G 
Subjt:  SYGRLRQPAVYVGGMQ-PNRG-----AYIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQ

Query:  LGQTVPGGHGYGAVHGYAMPSPQIL---QFSGPNVNALTSSPMPTIQAPYP------SGIPAPVAAQPQFVVHSPSQFVQGIDRLQQ
          Q  P           + P PQ      + G  V    +SPM      YP       G P P  ++P      P     G + +Q+
Subjt:  LGQTVPGGHGYGAVHGYAMPSPQIL---QFSGPNVNALTSSPMPTIQAPYP------SGIPAPVAAQPQFVVHSPSQFVQGIDRLQQ

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-8661.4Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP

Query:  RPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSANPTIYHYG
        RPP+ Y       GR+R P+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQQYLQ+YGVPG+ N   Y YG
Subjt:  RPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSANPTIYHYG

Query:  QLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
        QL  T+PG HGY A  GY+ P   +LQ          +SPM  IQ+PYPS  P+    Q + +V +P Q++Q
Subjt:  QLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-8661.4Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRP

Query:  RPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSANPTIYHYG
        RPP+ Y       GR+R P+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQQYLQ+YGVPG+ N   Y YG
Subjt:  RPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSANPTIYHYG

Query:  QLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
        QL  T+PG HGY A  GY+ P   +LQ          +SPM  IQ+PYPS  P+    Q + +V +P Q++Q
Subjt:  QLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.0e-4849.23Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--
        S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP  
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--

Query:  PISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYG-----VPGSAN--PTIYHYGQ
        P   G+   P+ Y GG Q +        G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG      P S+N  P+ Y+Y Q
Subjt:  PISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYG-----VPGSAN--PTIYHYGQ

Query:  LGQTVPGGH---GYGAVH--------GYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPS
             P  H    Y   H           +PS         NV A T S +PT Q P  S
Subjt:  LGQTVPGGH---GYGAVH--------GYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPS

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-10265.85Show/hide
Query:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGR
Subjt:  MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGV
        RANCNLASLGRPRPP+ Y       GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y   QG Y+P++GQQYLQ+YGV
Subjt:  RANCNLASLGRPRPPISY-------GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQQYLQIYGV

Query:  PGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
        PG+ N  +Y YGQL QT+P GHGY AV GY++P   ILQ  GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q
Subjt:  PGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ

AT1G78260.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-4648.81Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P
        S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPR  P
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P

Query:  PISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQIYG----VPGSANPTI----Y
        P   G+   P+ Y  G       Y    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+YG     P S+  TI    Y
Subjt:  PISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQIYG----VPGSANPTI----Y

Query:  HYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--VNALTSSPMPTIQ
        +YG   Q   VP  H +     Y        +FS P+  V    SS  P +Q
Subjt:  HYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--VNALTSSPMPTIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGG
TGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAG
GATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGC
CGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACC
GGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGC
AATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGA
TATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGC
ACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCG
GGCTTCGGATCTAG
mRNA sequenceShow/hide mRNA sequence
CAAAGTAGTAACAACAACCATGAAAAACGAAATTCTAAACCCTTCCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCGCCCTCCGCCGCCTCCCCCTCCCCT
TTCTCTCCGGCGCCGCCATCCCCTCCTCCTCCTCCACCTCCACCACCTTCGTATTCGTATTCTCCATTATTATGATCATTATTATACTCCTTCCAGATTCCCTTTCCCTC
TTCCCACTTTTTCCCCGTACAATTCCACCTTCTTCCTACGCTCCCTAGATCTCTCTCTCTATCTTTCTCTCTTTCCCTTCATCACCGACCTCCTCTCTTTCCCTCTCCCC
TGTTCCTCTTTGCCCCATCTCCATCTCCCTTTCTTTCTCACTCATTTCTAGGGTTTCTCTTTTCCTTTCTAATTATGATCACTCTTATTGGCTTTGATCCTTCCTCTTCT
GCCTTCCTTTCCCTCTTTCCTCTTTCTCTTTCTCTTCATCACTCCTCTCCTACCCTTTTCTTCCCTCTCCAATCCTTTTCAATTTCCTCCTGATTCTTCTCTCTGGGCTT
GCTTTTGCTATGTGGCTTCCTCTCTAATCCTCTTCTCTTCCACTTGATCTGTCTCTTTGTTTATATTGTATCTTGGGGGTTCAATTCTTTTTCACTTGTTTGTTTTCTTC
TTGAGTTTCTCCATTAATAATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTT
ACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAG
AATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTG
TAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAA
ATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGGTGGATAC
AACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGG
GTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCAT
ATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGG
AACTGCTACTTGAGTGGCGGGCTTCGGATCTAG
Protein sequenceShow/hide protein sequence
MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLG
RPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHG
YAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGIDRLQQDLEQRNCYLSGGLRI