CuGenDBv2

Gene ID	Clc08G09820
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NADH-ubiquinone oxidoreductase chain 5
Genome location	ClcChr08:21146688..21149105
RNA-Seq Expression	Clc08G09820
Synteny	Clc08G09820
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020712.1 hypothetical protein SDJN02_17399 [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-46

64.47

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Query:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA
        LSLNSISQFL+  V  C KSS+L RRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNI+SSR                     
Subjt:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA

Query:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                     VDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_004144225.1 uncharacterized protein LOC101213289 [Cucumis sativus]

1.9e-48

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY
        MLSLNSISQFLV F+C C  SS L    SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNI+SSR                  
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY

Query:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                        VDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT+LLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_008464874.1 PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]

1.7e-49

68.5

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY
        MLSLNSISQFLVRF+C C +SS L    SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNI+SSR                  
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY

Query:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                        VDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT+LLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_022951473.1 uncharacterized protein LOC111454282 [Cucurbita moschata]

1.3e-46

64.97

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Query:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA
        LSLNSISQFL+ FV  C KSS+L RRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNI+SSR                     
Subjt:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA

Query:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                     VDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

XP_038884232.1 uncharacterized protein LOC120075129 [Benincasa hispida]

1.1e-53

71.21

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL
        MLSLNSISQFLVRFVC CVKSS L  RPSSLEAKKR+SRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNI+SSR                    
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL

Query:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                      VDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT+LLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIH9 Uncharacterized protein

9.0e-49

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY
        MLSLNSISQFLV F+C C  SS L    SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNI+SSR                  
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY

Query:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                        VDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT+LLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A1S3CMK7 uncharacterized protein LOC103502637 isoform X1

8.1e-50

68.5

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY
        MLSLNSISQFLVRF+C C +SS L    SSLEAKKRRSRG  SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNI+SSR                  
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRG--SAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIY

Query:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                        VDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT+LLLLCMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1G568 uncharacterized protein LOC111450786

1.0e-44

62.63

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL
        MLSLNSISQFLV F+C CVK   L RRPS    +K  SRG+AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNI+SSR                    
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL

Query:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                      VDVVIFVIWELIILSFLVFSAVSLYFRHMQL F+LVCIT+LL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1GHS6 uncharacterized protein LOC111454282

6.4e-47

64.97

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Query:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA
        LSLNSISQFL+ FV  C KSS+L RRP+S EAK+ RSRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNI+SSR                     
Subjt:  LSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLA

Query:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                     VDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

A0A6J1KBR2 uncharacterized protein LOC111494024

3.9e-44

61.62

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Query:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL
        MLSLNSISQFLV F+C CVK     RRPS    +K  SRG+AMITRSNLVEQLREYQIRSKH+WAS SFFSSTSNI+SSR                    
Subjt:  MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVL

Query:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
                                      VDVVIFVIWELIILSFLVFSAVSLYFRHMQL F+L+CIT+LL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  ASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G20460.1 unknown protein

3.3e-35

60.26

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Query:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELI
        MITRSNL EQLREYQIRSKH+WASVSFFSSTSN SSSR                                                  VDVV+FVIWEL+
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELI

Query:  ILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
        IL+F VFSAVSLYF+ +QLAFILVC+TLLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  ILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

AT1G76185.1 unknown protein

1.4e-33

58.33

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Query:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELI
        MITRSNL EQLREYQIRSKH+WASVSFFSSTSN SSSR                                                  VDVV+FVIWEL+
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLASNYVSLESEVLISNNTILRIHFLVQKNVVVDVVIFVIWELI

Query:  ILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM
        +L+ +VFSAVSLYFR +QLAFIL+C+TLLLLLCMK+TKQVR ARKKKRRMLLPLSM
Subjt:  ILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTTGTTCGATTCGTTTGTAGCTGTGTTAAATCCTCCAATCTCCTCCGTCGCCCTTCCTCCCTTGAGGCAAAGAAAAGAAG
GTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCGTCTCCTTCTTCTCTTCTACCT
CCAATATTTCATCCTCCAGGATGATATGCAAGACTTTTGTTCTTCAAAAGAAAAAGAAAACCACATGTATTTATGTTTTAGCTTCCAATTATGTATCTCTTGAGAGTGAA
GTTCTAATTTCAAATAACACAATCTTGAGAATACATTTTCTTGTTCAAAAGAATGTTGTGGTGGATGTAGTGATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTT
GGTGTTTTCGGCCGTTTCTTTATATTTTCGGCATATGCAGTTGGCTTTTATTTTAGTATGCATCACGTTGTTATTGCTTCTATGCATGAAAGTTACAAAGCAAGTGAGAT
TGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA

mRNA sequence

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AAGGGAATAATGGAATGAATTTGGGGAAGAAGAAGGCCAGGAGGTGGGGGAAGTAGTAAGAGAAGGTCCACGCAGCGCAACAAACCCCTTCAACCTCAACCCCAACCTGA
ACCACTGCGAATTGATCGCTCATGCTCTCTCTCAATTCCATTTCTCAATTCCTTGTTCGATTCGTTTGTAGCTGTGTTAAATCCTCCAATCTCCTCCGTCGCCCTTCCTC
CCTTGAGGCAAAGAAAAGAAGGTCTCGGGGTTCAGCCATGATTACTCGATCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGAGTGGGCTTCCG
TCTCCTTCTTCTCTTCTACCTCCAATATTTCATCCTCCAGGATGATATGCAAGACTTTTGTTCTTCAAAAGAAAAAGAAAACCACATGTATTTATGTTTTAGCTTCCAAT
TATGTATCTCTTGAGAGTGAAGTTCTAATTTCAAATAACACAATCTTGAGAATACATTTTCTTGTTCAAAAGAATGTTGTGGTGGATGTAGTGATTTTTGTAATATGGGA
ACTCATAATTCTATCCTTCTTGGTGTTTTCGGCCGTTTCTTTATATTTTCGGCATATGCAGTTGGCTTTTATTTTAGTATGCATCACGTTGTTATTGCTTCTATGCATGA
AAGTTACAAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGAAAATCTGATAGTAGAAGGAGAGATATACTAAACTTTTTTTAT
TTTCTAAATTCCCCGAATTATATTCACAAAAATTAGATTTGGTCTTCTCTTCCCCCTCTACGCCTTGTTATATCGTGATCTGTAATCACCAGGAAAGCAGGTTTATCCGG
AGGAAAAAAAAAAAAAAAAATGGAATGAGATGAATGTGAGTAGTTTAGAAAGTTGTGAATGCTTTTTTATCTTAGTTTGGATCGTCTTCATGATTTGCCAGTTG

Protein sequence

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MLSLNSISQFLVRFVCSCVKSSNLLRRPSSLEAKKRRSRGSAMITRSNLVEQLREYQIRSKHEWASVSFFSSTSNISSSRMICKTFVLQKKKKTTCIYVLASNYVSLESE
VLISNNTILRIHFLVQKNVVVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCITLLLLLCMKVTKQVRLARKKKRRMLLPLSM

Clc08G09820 (gene) of Watermelon (cordophanus) v2 genome