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Clc08G10260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G10260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein, putative
Genome locationClcChr08:21643611..21644632
RNA-Seq ExpressionClc08G10260
SyntenyClc08G10260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064730.1 putative transmembrane protein [Cucumis melo var. makuwa]3.2e-8984.38Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATD-NKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLP
        MVRSFPTD+NPLIHPAISLF  AAGMAAAIAMITTLCGVRSRRRS+ SEASSPTAT+ NKA+EN SPTTTTPS ATA NPS  ETEN+G+   +KELPLP
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATD-NKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLP

Query:  PKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQV +SSPP+QI KSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEK+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA S
Subjt:  PKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SM--SFSRQGSAIDAEALPNPEAK
        SM  S SRQ SA +AEALPN EAK
Subjt:  SM--SFSRQGSAIDAEALPNPEAK

KAG6585751.1 hypothetical protein SDJN03_18484, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5569.27Show/hide
Query:  AAGMAAAIAMITTLCGVRSRRRSSS--SEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPLPPKMQQVVNSSPPSQIAKSA
        AAGM AAIAMIT LCGVRSR R SS  SEASS TA D K D N S TTT  S    T P  GE+ NDG   E+ MKELPLPPKMQQV + SPPS+IAKSA
Subjt:  AAGMAAAIAMITTLCGVRSRRRSSS--SEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPLPPKMQQVVNSSPPSQIAKSA

Query:  SERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM--SFSRQGSAIDAEALP
        SER+L HM S+++KVPRS SV R  L+EG  RRKEKM  EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ SSM  S SRQ SAIDAEALP
Subjt:  SERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM--SFSRQGSAIDAEALP

Query:  NPEAK
        +  AK
Subjt:  NPEAK

KAG6598610.1 hypothetical protein SDJN03_08388, partial [Cucurbita argyrosperma subsp. sororia]4.9e-8276.68Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPP
        MVRSFPTDENPLIHPAISL   AAGMAAAIAMITTLCG RSR+  ++SEASSPTA DNK DENASPT          NPSGGET NDGDEQ +KELPLPP
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPP

Query:  KMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSS
        KMQQ+ ++SPP+QI+KSASERKL HM+SM++ VPRSLSV R++LD+GR ++K+K+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKISAYHPRA SS
Subjt:  KMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSS

Query:  M--SFSRQGSAIDAEALPNPEAK
        M  S SRQGSAIDAEALP+PE K
Subjt:  M--SFSRQGSAIDAEALPNPEAK

KGN47811.2 hypothetical protein Csa_018925 [Cucumis sativus]3.6e-8580.72Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPP
        MVRSFPTD+NPLIHPAI LF  AAGMAAAI+MITTLCGVRSRRRS+ SE SS  A DNK DEN SPTTTT  P  A NPSGGE EN+G+   MKELPLPP
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPP

Query:  KMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSS
        KMQQV ++SPPSQI+KSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKE++KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA SS
Subjt:  KMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSS

Query:  M--SFSRQGSAIDAEALPNPEAK
        M  S SRQ SA++AEAL + EAK
Subjt:  M--SFSRQGSAIDAEALPNPEAK

XP_023002698.1 uncharacterized protein LOC111496482 [Cucurbita maxima]3.2e-6570.22Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPL
        MV SFPTDEN LIHPAISL   AAGM  AIAMIT LCGVRSRR  S SEASS TA D K D N S TTT+ S A AT P+ G++ +DG   E+ MKELPL
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPL

Query:  PPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAH
        PPKMQQV + SPPSQIAKSASER+L HM  M+++VPRS SV R  L+EG +RRKEKMK EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ 
Subjt:  PPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAH

Query:  SSM--SFSRQGSAIDAEALPNPEAK
        SSM  S SRQ SAIDAEALP+  AK
Subjt:  SSM--SFSRQGSAIDAEALPNPEAK

TrEMBL top hitse value%identityAlignment
A0A0A0KD46 Uncharacterized protein2.1e-7080.21Show/hide
Query:  MITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPPKMQQVVNSSPPSQIAKSASERKLNHMRSMSI
        MITTLCGVRSRRRS+ SE SS  A DNK DEN SPTTTT  P  A NPSGGE EN+G+   MKELPLPPKMQQV ++SPPSQI+KSASERKLNHMRSMSI
Subjt:  MITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPPKMQQVVNSSPPSQIAKSASERKLNHMRSMSI

Query:  KVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM--SFSRQGSAIDAEALPNPEAK
        KVPRSLSVVRNHLDEGRQRRKE++KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA SSM  S SRQ SA++AEAL + EAK
Subjt:  KVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSM--SFSRQGSAIDAEALPNPEAK

A0A2P5FDZ0 Uncharacterized protein4.1e-3447.01Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTT----PSPATATNPSGGETENDGDEQRMKEL
        M R  PT E  LIHP IS    AAGMAAAIA+I+ LCGVR RR+SSSS ++ PT+  NK +  A P+TTT    PS +++      + E    +  + +L
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTT----PSPATATNPSGGETENDGDEQRMKEL

Query:  PLPPK--MQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDE------------GRQRRKEKMKGEESIWTKTIILGEKCKVPD-EEDGI
        PLPP   +++   +     + KS S+R  N   S+S+KV RS S+ R+  +             G++  K KM  ++SIW KTIILGEKCKVPD EE+ +
Subjt:  PLPPK--MQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDE------------GRQRRKEKMKGEESIWTKTIILGEKCKVPD-EEDGI

Query:  IYEGKGKKISAYHPRAHSSMSFSRQGSAIDAEAL
        IYEGKGKKISAYHPR  SS+S SRQ S ID EA+
Subjt:  IYEGKGKKISAYHPRAHSSMSFSRQGSAIDAEAL

A0A5A7VC31 Putative transmembrane protein1.5e-8984.38Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATD-NKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLP
        MVRSFPTD+NPLIHPAISLF  AAGMAAAIAMITTLCGVRSRRRS+ SEASSPTAT+ NKA+EN SPTTTTPS ATA NPS  ETEN+G+   +KELPLP
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATD-NKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLP

Query:  PKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS
        PKMQQV +SSPP+QI KSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEK+KGE+SIWTKTIILGEKCKV DEEDGIIYEGKGKKI+AYHPRA S
Subjt:  PKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHS

Query:  SM--SFSRQGSAIDAEALPNPEAK
        SM  S SRQ SA +AEALPN EAK
Subjt:  SM--SFSRQGSAIDAEALPNPEAK

A0A6A1WQ24 Uncharacterized protein1.4e-3746.72Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRS-RRRSSSSEASSPTATDNKAD-ENASPTT------TTPSPATATNPSGGETENDGDEQR
        MVR  PT+E PL HP +S    A G+AAAIA IT LCG R  +R S  S +S    T  K D  N + TT      T PSP  A  P+  E      E +
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRS-RRRSSSSEASSPTATDNKAD-ENASPTT------TTPSPATATNPSGGETENDGDEQR

Query:  MKELPLPPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISA
         +ELPLPP M  +  S    +I KS+S+R L   +++++K+PRSLS+ R    E   +RK+ +  E+SIW KTIILGEKCKVPDE+D +IY+GKGK+IS 
Subjt:  MKELPLPPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISA

Query:  YHPRAHSSMSFSRQGSAIDAEALPNPEAK
        YHP+  S +S SR+GS  + EA P PE +
Subjt:  YHPRAHSSMSFSRQGSAIDAEALPNPEAK

A0A6J1KUB9 uncharacterized protein LOC1114964821.5e-6570.22Show/hide
Query:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPL
        MV SFPTDEN LIHPAISL   AAGM  AIAMIT LCGVRSRR  S SEASS TA D K D N S TTT+ S A AT P+ G++ +DG   E+ MKELPL
Subjt:  MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDG--DEQRMKELPL

Query:  PPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAH
        PPKMQQV + SPPSQIAKSASER+L HM  M+++VPRS SV R  L+EG +RRKEKMK EE IW KTIILGEKC+V DEEDG+IYEGKGK+ISAYHPR+ 
Subjt:  PPKMQQVVNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAH

Query:  SSM--SFSRQGSAIDAEALPNPEAK
        SSM  S SRQ SAIDAEALP+  AK
Subjt:  SSM--SFSRQGSAIDAEALPNPEAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26114.1 unknown protein1.2e-0638.27Show/hide
Query:  VVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKIS---AYHPRAHSSMSFSRQGSAIDAEALP
        V++   +E +  RK+K+  + SI    IILGE+C+V D E+G   E + ++++    Y PR+ SS+S SR  S ID  A+P
Subjt:  VVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKIS---AYHPRAHSSMSFSRQGSAIDAEALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGAAGCTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCACTATTCTTTTTTGCGGCCGGAATGGCAGCGGCTATTGCCATGATCACGACG
TTATGCGGTGTCCGATCACGAAGAAGATCGTCGTCGTCCGAAGCTTCGTCTCCGACCGCCACAGACAATAAAGCAGACGAAAACGCTTCCCCGACAACAACGACA
CCATCTCCGGCGACGGCGACAAACCCATCTGGTGGAGAAACAGAGAACGACGGTGACGAACAGAGGATGAAAGAACTTCCTCTGCCTCCAAAAATGCAACAAGTG
GTGAATTCGAGCCCGCCGAGCCAGATTGCAAAATCAGCATCGGAGAGAAAATTGAACCATATGAGAAGCATGAGCATTAAAGTTCCGAGGAGTCTTTCAGTTGTG
AGGAATCATTTGGATGAAGGGAGACAGAGAAGGAAGGAGAAGATGAAAGGGGAAGAATCGATTTGGACAAAGACAATAATATTAGGGGAAAAATGCAAAGTTCCA
GATGAAGAAGATGGAATTATATATGAAGGAAAAGGGAAGAAGATATCGGCTTATCATCCAAGAGCTCATAGTTCCATGTCGTTTTCAAGACAAGGTTCTGCCATC
GATGCTGAAGCTCTGCCAAACCCAGAAGCAAAATAG
mRNA sequenceShow/hide mRNA sequence
GGAGTTGAAATAGAGAGCGAAAAGAAAAACAGAGTATTCGACAAAAATGAACAGATGAAAACAGAGATCCTTTGTTGGGTTTTCTTTTCCTCTGTTTTTTAAATG
CTTTAGTCATGGTGAGAAGCTTTCCGACGGATGAGAACCCGTTAATTCATCCGGCGATTTCACTATTCTTTTTTGCGGCCGGAATGGCAGCGGCTATTGCCATGA
TCACGACGTTATGCGGTGTCCGATCACGAAGAAGATCGTCGTCGTCCGAAGCTTCGTCTCCGACCGCCACAGACAATAAAGCAGACGAAAACGCTTCCCCGACAA
CAACGACACCATCTCCGGCGACGGCGACAAACCCATCTGGTGGAGAAACAGAGAACGACGGTGACGAACAGAGGATGAAAGAACTTCCTCTGCCTCCAAAAATGC
AACAAGTGGTGAATTCGAGCCCGCCGAGCCAGATTGCAAAATCAGCATCGGAGAGAAAATTGAACCATATGAGAAGCATGAGCATTAAAGTTCCGAGGAGTCTTT
CAGTTGTGAGGAATCATTTGGATGAAGGGAGACAGAGAAGGAAGGAGAAGATGAAAGGGGAAGAATCGATTTGGACAAAGACAATAATATTAGGGGAAAAATGCA
AAGTTCCAGATGAAGAAGATGGAATTATATATGAAGGAAAAGGGAAGAAGATATCGGCTTATCATCCAAGAGCTCATAGTTCCATGTCGTTTTCAAGACAAGGTT
CTGCCATCGATGCTGAAGCTCTGCCAAACCCAGAAGCAAAATAGAGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGACTAATGGGGTG
TGCTTGAAAATCAATGACTGATGGAATTGTGATTGTTGTTTTGTTGAATGTGTAGAGGAAATCTTGTGAATGGCTGTTGTCTCTTTCTCTTTTATTTTTTCACTT
CTCTGTTTTTTTTAAAAGACTTCGTTGCTCATTCTTTCTTCTTTGGTTAATTAATGAAGTGAAACAAGTTTTAGCCA
Protein sequenceShow/hide protein sequence
MVRSFPTDENPLIHPAISLFFFAAGMAAAIAMITTLCGVRSRRRSSSSEASSPTATDNKADENASPTTTTPSPATATNPSGGETENDGDEQRMKELPLPPKMQQV
VNSSPPSQIAKSASERKLNHMRSMSIKVPRSLSVVRNHLDEGRQRRKEKMKGEESIWTKTIILGEKCKVPDEEDGIIYEGKGKKISAYHPRAHSSMSFSRQGSAI
DAEALPNPEAK