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Clc08G10290 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G10290
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCBFD_NFYB_HMF domain-containing protein
Genome locationClcChr08:21652816..21653454
RNA-Seq ExpressionClc08G10290
SyntenyClc08G10290
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]1.5e-6293.57Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE+GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+A KRHRSISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]7.5e-6293.57Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE+GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+A KRHRSISDFLLDSLPLPSQ SDA 
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]8.3e-6191.43Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIRIA KRH+SISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_023547243.1 putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]4.1e-6090Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        M E+E+GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIRIA KRH+SISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRPAKT SAE NE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]5.8e-6293.57Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        M EEE+G+AIRPEFPTGRVKKIMKLDKDI KVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIA KRHRSISDFLLDSLPLP Q SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTRTVVDKV PEGTRRIDDFFRRPAKTTSAE NES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein3.4e-6093.43Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIR+A KRHRSISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAET

A0A1S3BDL4 dr1-associated corepressor3.6e-6293.57Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE+GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+A KRHRSISDFLLDSLPLPSQ SDA 
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor7.3e-6393.57Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE+GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+A KRHRSISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A6J1HCT3 DNA polymerase epsilon subunit C2.6e-6090Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIRIA KRH+SI DFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C4.0e-6191.43Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIRIA KRH+SISDFLLDSLPLPSQ SDAP
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES
        AKDENRTR VVDKVAPEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A4.7e-0632.35Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL------PLPSQRSDAPAKD
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ A  +   + DFL D +      P   ++ D    D
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL------PLPSQRSDAPAKD

Query:  EN
        +N
Subjt:  EN

Q2YDP3 Dr1-associated corepressor1.8e-0534.88Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL-PLPSQRSD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++   +  +   DFL D +  +P  + D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL-PLPSQRSD

Q4X095 NCT transcriptional regulatory complex subunit A4.7e-0632.35Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL------PLPSQRSDAPAKD
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ A  +   + DFL D +      P   ++ D    D
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSL------PLPSQRSDAPAKD

Query:  EN
        +N
Subjt:  EN

Q54DA1 Dr1-associated corepressor homolog1.4e-0534.62Show/hide
Query:  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLD
        + +FP  R+KKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + H++   K+  S  DFL +
Subjt:  RPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLD

Q9W256 DNA polymerase epsilon subunit 47.9e-0638.24Show/hide
Query:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIA
        EA   + P  R++ IMKLD D+   N+EA+F+V+ A ELF+  L+ +S    A+ K+KT++   + +A
Subjt:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIA

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C101.6e-0629.67Show/hide
Query:  EEEETG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + + + K+K +  +H+       +   +FL DS+P
Subjt:  EEEETG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C111.5e-0739.73Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFL
        FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++   +R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFL

AT5G19490.1 Histone superfamily protein7.4e-0732.38Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRT--
        ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +V   +  KTV   H++   +   ++ DFL D++        +  +D++ T  
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRT--

Query:  RTVVD
        R VVD
Subjt:  RTVVD

AT5G27910.1 nuclear factor Y, subunit C81.1e-0536.79Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVD
        + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AA     I DFLLD      + S A A D      + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVD

Query:  KVAPEG
           P G
Subjt:  KVAPEG

AT5G43250.1 nuclear factor Y, subunit C133.4e-3665.47Show/hide
Query:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V AEKKRKTV L+H+RIA KRH+  SDFLLDSLPLP+Q    P
Subjt:  MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAP

Query:  AKDENRTRTVVDK---VAPEGTRRIDDFFRR-PAKTTSA
         K    T++V DK     P GTRRIDDFF +  AKT SA
Subjt:  AKDENRTRTVVDK---VAPEGTRRIDDFFRR-PAKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAAGAACCCCCGCCACAATTGAGAAAGACCCACTCATATTGTAACGAAAGCCATCTTCCGGCATCGGATTATTGCAAGTTCATTCAGATTCCGGATATGGAGGA
AGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCAACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAG
TCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCC
AAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAA
AGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAAGAACCCCCGCCACAATTGAGAAAGACCCACTCATATTGTAACGAAAGCCATCTTCCGGCATCGGATTATTGCAAGTTCATTCAGATTCCGGATATGGAGGA
AGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCAACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAG
TCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCC
AAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAA
AGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG
Protein sequenceShow/hide protein sequence
MPKEPPPQLRKTHSYCNESHLPASDYCKFIQIPDMEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAA
KRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES