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Clc08G10340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G10340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box/kelch-repeat protein
Genome locationClcChr08:21704639..21706202
RNA-Seq ExpressionClc08G10340
SyntenyClc08G10340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064737.1 F-box/kelch-repeat protein [Cucumis melo var. makuwa]1.5e-2582.89Show/hide
Query:  GILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        GIL MHRGR    KLQNITH  ISSK KREFGMDFESDWTRH KSS FAA VIRSATSFM WSCRIPISEGY EFL
Subjt:  GILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

KAE8647234.1 hypothetical protein Csa_019002, partial [Cucumis sativus]4.5e-3587.64Show/hide
Query:  LWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        LWGANLASSMALTGIL MHRGR   IKLQNITH   SSKHKREFGMDFESDWTRH KSS FAA VIRSATSFM WSCRIPISEGYHEFL
Subjt:  LWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

KAG2702702.1 hypothetical protein I3760_06G102300 [Carya illinoinensis]6.6e-1864.63Show/hide
Query:  MALTGILAMHRGRGISIKLQNITHIPISSKH--KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        MAL+ I AM  GR  ++ L++I HI     H   +  GM+FESDWTRH KSS F AQVIRSATSFMPWSCRIPI EGYHEFL
Subjt:  MALTGILAMHRGRGISIKLQNITHIPISSKH--KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

KAG6585216.1 hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3673.95Show/hide
Query:  LLNPICCLYFSSCSIILVDSASKIIVNGFLWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREF-GMDFESDWTRHRKSSPFAAQVIRSAT
        L NP+CC     C   L D     I     WGANLASSMALTGILAMHR RG SIKLQ+ITH  ISSK+ REF GMDFESDWTRHRKSS FAAQVIRSAT
Subjt:  LLNPICCLYFSSCSIILVDSASKIIVNGFLWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREF-GMDFESDWTRHRKSSPFAAQVIRSAT

Query:  SFMPWSCRIPISEGYHEFL
        SFMPWSCRIPIS+GYHEFL
Subjt:  SFMPWSCRIPISEGYHEFL

KAG7020136.1 hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-3588.76Show/hide
Query:  WGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREF-GMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        WGANLASSMALTGILAMHR RG SIKLQ+ITH  ISSK+ REF GMDFESDWTRHRKSS FAAQVIRSATSFMPWSCRIPIS+GYHEFL
Subjt:  WGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREF-GMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

TrEMBL top hitse value%identityAlignment
A0A0A0KD56 Uncharacterized protein2.2e-3571.93Show/hide
Query:  CCLYFSSC-SIILVDSASKIIVNGFLWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPW
        CC +  +C + + + + S       LWGANLASSMALTGIL MHRGR   IKLQNITH   SSKHKREFGMDFESDWTRH KSS FAA VIRSATSFM W
Subjt:  CCLYFSSC-SIILVDSASKIIVNGFLWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPW

Query:  SCRIPISEGYHEFL
        SCRIPISEGYHEFL
Subjt:  SCRIPISEGYHEFL

A0A444WZZ5 Uncharacterized protein5.6e-1555.17Show/hide
Query:  LASSMALTGILAMHRG--RGISIKLQNITHIPISS-KHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        L SSMA T + AM +G  +  S++  ++T I  S+    R   M+FESDWT+HRKSS + A VIRSATS +PWSCR+PI EGYHEFL
Subjt:  LASSMALTGILAMHRG--RGISIKLQNITHIPISS-KHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

A0A5A7VCL2 F-box/kelch-repeat protein7.1e-2682.89Show/hide
Query:  GILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        GIL MHRGR    KLQNITH  ISSK KREFGMDFESDWTRH KSS FAA VIRSATSFM WSCRIPISEGY EFL
Subjt:  GILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

A0A5J5ASN4 Uncharacterized protein9.3e-1862.5Show/hide
Query:  LASSMALTGILAMHRGRGISIKLQ-NITHIPISSKH---KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        ++S MAL    AM  GR  S KL+ +IT    + K+    R  GMDFESDWT+HRKSS F A+VIRSATSFMPWSC+IPISEGYHEFL
Subjt:  LASSMALTGILAMHRGRGISIKLQ-NITHIPISSKH---KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

A0A5J5AWB6 Uncharacterized protein4.6e-1761.36Show/hide
Query:  LASSMALTGILAMHRGRGISIKLQ-NITHIPISSKH---KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL
        ++SSMAL    AM  GR  S KL+ +IT    + K+    R   MDFESDWT+HRKSS F A+VIRSATSFMPWSC+IPI EGYHEFL
Subjt:  LASSMALTGILAMHRGRGISIKLQ-NITHIPISSKH---KREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEGYHEFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCAAAATCCTTGATTAGAGGAACACAAAGACGACAATTATCGTCTCCGAATCGTTCGTCTCTTGGTAAAGCAGAAGCAAAGCAGCAGTTGCGGGGAAAATCTCC
TTCTGACGTGTTCTGCTTCTGTCAGTTTTATCCTTTTCTCAATTCCCTATTCTTCGCTTGCTATAAAATCCCTTCTTCTTCGTTTTCCAATCCCACCCTAAACCAAACCC
AACTCCATAATCTTCTTCATTTCTCTCACCAACCCTCTTCTTTGCTTTTTCAGATCTGGTTGAAGAGCTCTTGCCTTGTAGTACCCTTTAGAAGTGGGGGACTGTTGAAT
CCAATTTGTTGCTTGTATTTCTCTTCATGCTCTATAATTCTTGTGGACTCCGCCTCTAAAATAATAGTTAATGGATTTTTATGGGGGGCTAACCTGGCAAGTTCTATGGC
ATTGACTGGTATTTTGGCAATGCATAGAGGAAGAGGGATCTCTATAAAGTTGCAGAACATCACTCATATTCCCATATCTAGTAAACATAAACGTGAATTTGGTATGGACT
TTGAATCAGACTGGACAAGACACAGAAAGTCCTCTCCATTTGCTGCTCAAGTGATTCGTTCTGCTACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTGAAGGA
TATCACGAATTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCAAAATCCTTGATTAGAGGAACACAAAGACGACAATTATCGTCTCCGAATCGTTCGTCTCTTGGTAAAGCAGAAGCAAAGCAGCAGTTGCGGGGAAAATCTCC
TTCTGACGTGTTCTGCTTCTGTCAGTTTTATCCTTTTCTCAATTCCCTATTCTTCGCTTGCTATAAAATCCCTTCTTCTTCGTTTTCCAATCCCACCCTAAACCAAACCC
AACTCCATAATCTTCTTCATTTCTCTCACCAACCCTCTTCTTTGCTTTTTCAGATCTGGTTGAAGAGCTCTTGCCTTGTAGTACCCTTTAGAAGTGGGGGACTGTTGAAT
CCAATTTGTTGCTTGTATTTCTCTTCATGCTCTATAATTCTTGTGGACTCCGCCTCTAAAATAATAGTTAATGGATTTTTATGGGGGGCTAACCTGGCAAGTTCTATGGC
ATTGACTGGTATTTTGGCAATGCATAGAGGAAGAGGGATCTCTATAAAGTTGCAGAACATCACTCATATTCCCATATCTAGTAAACATAAACGTGAATTTGGTATGGACT
TTGAATCAGACTGGACAAGACACAGAAAGTCCTCTCCATTTGCTGCTCAAGTGATTCGTTCTGCTACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTGAAGGA
TATCACGAATTTCTTTAA
Protein sequenceShow/hide protein sequence
MQAKSLIRGTQRRQLSSPNRSSLGKAEAKQQLRGKSPSDVFCFCQFYPFLNSLFFACYKIPSSSFSNPTLNQTQLHNLLHFSHQPSSLLFQIWLKSSCLVVPFRSGGLLN
PICCLYFSSCSIILVDSASKIIVNGFLWGANLASSMALTGILAMHRGRGISIKLQNITHIPISSKHKREFGMDFESDWTRHRKSSPFAAQVIRSATSFMPWSCRIPISEG
YHEFL