CuGenDBv2

Gene ID	Clc08G10390
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	60S ribosomal protein L5-like
Genome location	ClcChr08:21719613..21720391
RNA-Seq Expression	Clc08G10390
Synteny	Clc08G10390
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005485 - Ribosomal protein L5 eukaryotic/L18 archaeal IPR025607 - Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598618.1 60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. sororia]

5.9e-31

90.12

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MR+LMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIR +PLAKT+ KQPPK+HKRYNLKKLTY+ER+AKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

KAG7029556.1 60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.9e-31

90.12

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MR+LMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIR +PLAKT+ KQPPK+HKRYNLKKLTY+ER+AKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

XP_004144191.1 60S ribosomal protein L5-like [Cucumis sativus]

5.3e-32

92.59

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKKVHSAIRA+PL KT+EKQPPK HKRYNLKKLTYE+RKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

XP_008445491.1 PREDICTED: 60S ribosomal protein L5-like [Cucumis melo]

1.8e-32

93.83

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKKVHSAIRA+PLAKT+EKQPPK HKRYNLKKLTYE+RKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

XP_038884001.1 60S ribosomal protein L5-like [Benincasa hispida]

1.4e-32

95.06

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRA+PLAKT+E QPPKKHKRYNLKKLTYEERK+KLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFL3 Ribosomal_L18_c domain-containing protein

2.6e-32

92.59

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKKVHSAIRA+PL KT+EKQPPK HKRYNLKKLTYE+RKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

A0A1S3BCD6 60S ribosomal protein L5-like

8.8e-33

93.83

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKKVHSAIRA+PLAKT+EKQPPK HKRYNLKKLTYE+RKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

A0A5A7VC42 60S ribosomal protein L5-like

8.8e-33

93.83

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQ+QFSDYIKKGIEPDNIEELLKKVHSAIRA+PLAKT+EKQPPK HKRYNLKKLTYE+RKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

A0A6J1GH83 60S ribosomal protein L5-like

1.4e-30

90.12

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQSQFS+YIKKGI+ DNIEELLKKVHSAIR++PL K  EKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

A0A6J1HCU2 60S ribosomal protein L5-like

6.3e-31

90.12

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MR+LMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIR +PLAKT+ KQPPK HKRYNLKKLTY+ER+AKLVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

SwissProt top hits

e value

%identity

Alignment

A2WXX3 60S ribosomal protein L5-1

5.2e-22

65.43

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MR++ E+EPEK+Q+ FS+Y+KKGI+ D +E L KKVH+AIRA P    S K+ P  HKRYNLKKLTYE+RKA LVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

P49227 60S ribosomal protein L5-2

1.0e-22

67.9

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M+ L EDEPEK Q+ FS YIKKG+E ++IEE+ KKVH+AIRA+P  K +EK  PK+HKRYNLKKLTYEERK KL+ER+ AL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

P93779 60S ribosomal protein L5 (Fragment)

5.3e-27

76.54

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M  LMEDEPEKYQS FS YIK  + PDNIEE+ KKVH+AIR  P  K S+KQPPK HKRYNLKKLTYEERKAKL+ERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

Q6UNT2 60S ribosomal protein L5

4.8e-28

79.01

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MRTLMEDEPEKYQS FS+YIKKGIE D +E L KKVH+AIRA P+AK S+K  PK HKRYNLKKLTY+ERKA+LVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

Q8L4L4 60S ribosomal protein L5-2

4.0e-22

65.43

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        MR++ E+EPEK+Q+ FS+Y+KKGI+ D +E L KKVH+AIRA P    S K+ P  HKRYNLKKLTYE+RKA LVERLNAL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

Arabidopsis top hits

e value

%identity

Alignment

AT3G25520.1 ribosomal protein L5

4.8e-23

67.9

Show/hide

Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M+ L EDEPEK Q+ FS YIKKG+E ++IEEL KKVH+AIRA P  K + K  PK+HKRYNLKKLTYEERK KL+ER+ AL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

AT3G25520.2 ribosomal protein L5

4.8e-23

67.9

Show/hide

Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M+ L EDEPEK Q+ FS YIKKG+E ++IEEL KKVH+AIRA P  K + K  PK+HKRYNLKKLTYEERK KL+ER+ AL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

AT5G39740.1 ribosomal protein L5 B

7.4e-24

67.9

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M+ L EDEPEK Q+ FS YIKKG+E ++IEE+ KKVH+AIRA+P  K +EK  PK+HKRYNLKKLTYEERK KL+ER+ AL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

AT5G39740.2 ribosomal protein L5 B

7.4e-24

67.9

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Query:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL
        M+ L EDEPEK Q+ FS YIKKG+E ++IEE+ KKVH+AIRA+P  K +EK  PK+HKRYNLKKLTYEERK KL+ER+ AL
Subjt:  MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNAL

Sequences

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CDS sequence

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ATGCGGACCTTGATGGAGGATGAACCAGAGAAGTATCAATCTCAATTCAGTGATTACATCAAGAAAGGAATTGAGCCTGACAACATCGAGGAGTTGTTGAAGAAA
GTTCATTCTGCAATCCGTGCAAAACCATTGGCAAAGACCTCTGAGAAGCAACCACCAAAGAAGCACAAGAGGTATAACTTGAAGAAGCTCACATATGAAGAAAGG
AAGGCCAAGTTGGTCGAGCGATTGAATGCATTGAAATTCTGCTGCTGGAGCTGA

mRNA sequence

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TTTCACGTCTCACAGGGAGCTCTAGATGGTGGATTGGATGTTCCACACAGCGTCAAGAGGTTTGCTGGTTTTTCAAAAGACAGCAAGGAGCTTGACGCTGATGTT
CATCGCAAATACATTTTGGAGGCCACGTTGCTGCCTATATGCGGACCTTGATGGAGGATGAACCAGAGAAGTATCAATCTCAATTCAGTGATTACATCAAGAAAG
GAATTGAGCCTGACAACATCGAGGAGTTGTTGAAGAAAGTTCATTCTGCAATCCGTGCAAAACCATTGGCAAAGACCTCTGAGAAGCAACCACCAAAGAAGCACA
AGAGGTATAACTTGAAGAAGCTCACATATGAAGAAAGGAAGGCCAAGTTGGTCGAGCGATTGAATGCATTGAAATTCTGCTGCTGGAGCTGACGACGATGAAGAA
GATGAAGAGTGATTTAACTAGGTTGCCTGCAGTCTCAACACAAACTGTATTTCAACCAATTCTATCAGTACAAACCATTTAGATTATGTGAGAATATCCATAGAT
TATTTTTTCTCTGCCTCTGGCGATTTTGCAGCATTTTTAGCGTTTTTGTTATCTCGTTTTTTTTTT

Protein sequence

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MRTLMEDEPEKYQSQFSDYIKKGIEPDNIEELLKKVHSAIRAKPLAKTSEKQPPKKHKRYNLKKLTYEERKAKLVERLNALKFCCWS

Clc08G10390 (gene) of Watermelon (cordophanus) v2 genome