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Clc08G10690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G10690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein SPIRAL1-like 1
Genome locationClcChr08:21957088..21958017
RNA-Seq ExpressionClc08G10690
SyntenyClc08G10690
Gene Ontology termsGO:0043622 - cortical microtubule organization (biological process)
GO:0010005 - cortical microtubule, transverse to long axis (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR039613 - Protein SPIRAL1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144171.1 protein SPIRAL1-like 1 [Cucumis sativus]4.4e-5392.5Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPP +E KT+SKPAV+KPAATASPPAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

XP_008445444.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]1.6e-5596.67Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPPSNEGKTVSKPAV+KPAATASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

XP_022132002.1 protein SPIRAL1-like 2 [Momordica charantia]8.9e-4687.9Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTG------APKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG GEAPN G      AP GG QAPPPSNEGKTVSKP    PAA ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTG------APKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

XP_022961880.1 protein SPIRAL1-like 2 [Cucurbita moschata]8.6e-4991.53Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVSSGGGQSSLGYLFG GEAPN GAPKGG+   PPSNEGK VSKPA +KPAATASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGGAGGK
        APGGGSSLDYLFGGAGGK
Subjt:  APGGGSSLDYLFGGAGGK

XP_038886245.1 protein SPIRAL1-like 1 [Benincasa hispida]6.1e-5596.67Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPP NEGKTVSKPAV+KPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

TrEMBL top hitse value%identityAlignment
A0A0A0KFN2 Uncharacterized protein2.1e-5392.5Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPP +E KT+SKPAV+KPAATASPPAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

A0A1S3BCR3 protein SPIRAL1-like 17.8e-5696.67Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPPSNEGKTVSKPAV+KPAATASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

A0A5A7VC71 Protein SPIRAL1-like 17.8e-5696.67Show/hide
Query:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        MGGRGVSSGGGQSSLGYLFGDG+APN GAPKGGRQAPPPSNEGKTVSKPAV+KPAATASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
Subjt:  MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGGAGGK
        HAAPGGGSSLDYLFGGAGGK
Subjt:  HAAPGGGSSLDYLFGGAGGK

A0A6J1HDG7 protein SPIRAL1-like 24.2e-4991.53Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVSSGGGQSSLGYLFG GEAPN GAPKGG+   PPSNEGK VSKPA +KPAATASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGGAGGK
        APGGGSSLDYLFGGAGGK
Subjt:  APGGGSSLDYLFGGAGGK

A0A6J1K972 protein SPIRAL1-like 24.2e-4991.53Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVSSGGGQSSLGYLFG GEAPN GAPKGG+   PPSNEGK VSKPA +KPAATASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGGAGGK
        APGGGSSLDYLFGGAGGK
Subjt:  APGGGSSLDYLFGGAGGK

SwissProt top hitse value%identityAlignment
B3H4F1 Protein SPIRAL1-like 17.6e-3268.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVS GGGQSSLGYLFG GEAP          AP PS+E   +S  A   P   A+   +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHA
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGGAG
        APGGGSSLDYLFGG G
Subjt:  APGGGSSLDYLFGGAG

Q2QQ99 Protein SPIRAL1-like 35.6e-2763.48Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPA-VTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
        GRGVSSGGGQSSLGYLFG GEAP                  K+  KPA V KPA ++S  A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV 
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPA-VTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH

Query:  AAPGGGSSLDYLFGG
        AAPGGGSSLDYLF G
Subjt:  AAPGGGSSLDYLFGG

Q2R0W8 Protein SPIRAL1-like 21.8e-2561.21Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPP--ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        GRGVSSGGGQSSLGYLFG GE     AP   +  P  + E +T   P      A A+ P  A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKV
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPP--ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGG
        HAAPGGGSSL YLFGG
Subjt:  HAAPGGGSSLDYLFGG

Q7Y1L9 Protein SPIRAL1-like 12.5e-2766.09Show/hide
Query:  RGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP-PADVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVH
        RG S+GGGQSSLGYLFG  EAP   A      AP P+      +  AV  PA   SP  AD TKQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVH
Subjt:  RGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASP-PADVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVH

Query:  AAPGGGSSLDYLFGG
        AAPGGGSSL YLFGG
Subjt:  AAPGGGSSLDYLFGG

Q9LE54 Protein SPIRAL1-like 26.6e-2862.28Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVS+GGGQSSLGYLFG GEAP   A        P   E    + P      A A+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGG
        APGGGSSLDYLFGG
Subjt:  APGGGSSLDYLFGG

Arabidopsis top hitse value%identityAlignment
AT1G26355.1 SPIRAL1-like15.4e-3368.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVS GGGQSSLGYLFG GEAP          AP PS+E   +S  A   P   A+   +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHA
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGGAG
        APGGGSSLDYLFGG G
Subjt:  APGGGSSLDYLFGGAG

AT1G69230.1 SPIRAL1-like24.7e-2962.28Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVS+GGGQSSLGYLFG GEAP   A        P   E    + P      A A+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGG
        APGGGSSLDYLFGG
Subjt:  APGGGSSLDYLFGG

AT1G69230.2 SPIRAL1-like24.7e-2962.28Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA
        GRGVS+GGGQSSLGYLFG GEAP   A        P   E    + P      A A+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHA

Query:  APGGGSSLDYLFGG
        APGGGSSLDYLFGG
Subjt:  APGGGSSLDYLFGG

AT2G03680.1 spiral11.1e-2561.86Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATAS----PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST
        GRG S GGGQSSL YLFG G+AP        R AP  SN G      AVT  A T +     PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPST
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATAS----PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST

Query:  KVHAAPGGGSSLDYLFGG
        KVHAAPGGGSSLDYLF G
Subjt:  KVHAAPGGGSSLDYLFGG

AT2G03680.2 spiral11.1e-2561.86Show/hide
Query:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATAS----PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST
        GRG S GGGQSSL YLFG G+AP        R AP  SN G      AVT  A T +     PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPST
Subjt:  GRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATAS----PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST

Query:  KVHAAPGGGSSLDYLFGG
        KVHAAPGGGSSLDYLF G
Subjt:  KVHAAPGGGSSLDYLFGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGTCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGAAGCTCCGAACACAGGTGCACCTAAAGGTGGCCGCCAAGCACC
GCCACCTTCAAATGAAGGGAAGACTGTATCCAAACCAGCAGTGACCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGTTACCAAGCAGATTCCAGCTGGTATTCATA
GTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCCGCCCCGGGTGGCGGATCTTCTCTG
GATTATCTGTTTGGCGGTGCTGGTGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGTCGTGGAGTTAGCAGTGGTGGGGGTCAGAGCTCACTGGGGTACCTGTTTGGTGATGGAGAAGCTCCGAACACAGGTGCACCTAAAGGTGGCCGCCAAGCACC
GCCACCTTCAAATGAAGGGAAGACTGTATCCAAACCAGCAGTGACCAAACCTGCTGCTACTGCTTCACCACCTGCAGATGTTACCAAGCAGATTCCAGCTGGTATTCATA
GTAGCTCCTCAAACAACTATTTGAGGGCTGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTCCACGCCGCCCCGGGTGGCGGATCTTCTCTG
GATTATCTGTTTGGCGGTGCTGGTGGAAAATGA
Protein sequenceShow/hide protein sequence
MGGRGVSSGGGQSSLGYLFGDGEAPNTGAPKGGRQAPPPSNEGKTVSKPAVTKPAATASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSL
DYLFGGAGGK