CuGenDBv2

Gene ID	Clc08G11175
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Genome location	ClcChr08:22431525..22432252
RNA-Seq Expression	Clc08G11175
Synteny	Clc08G11175
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

2.1e-50

59.3

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL+D LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

6.2e-50

58.72

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL++ LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

KAA0043030.1 retrotransposon protein [Cucumis melo var. makuwa]

8.1e-50

59.04

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Query:  LQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSR
        L  D+ R   +P   RH+IRQL +F++I+E D  CR++TRMDRRTFTILC LLRT   +  T+ VDVEEMVA+FLH++AHDVKNRV++ +F RSG+TVSR
Subjt:  LQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSR

Query:  HFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARL
        HFNIVL  ++RLY+ L+++L P+  NC D RW+ F+NCLGALDGT+IKVNV A DRP +RT   ++
Subjt:  HFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARL

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

2.1e-50

59.3

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL+D LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

KAA0047510.1 retrotransposon protein [Cucumis melo var. makuwa]

8.1e-50

55.85

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CRE+TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFLLYAIKRVSSYSFLLDG
         HFN+VL A++RL++ LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +  T +L    R   + ++L G
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFLLYAIKRVSSYSFLLDG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

1.0e-50

59.3

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL+D LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

A0A5A7TI78 Retrotransposon protein

3.9e-50

59.04

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Query:  LQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSR
        L  D+ R   +P   RH+IRQL +F++I+E D  CR++TRMDRRTFTILC LLRT   +  T+ VDVEEMVA+FLH++AHDVKNRV++ +F RSG+TVSR
Subjt:  LQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSR

Query:  HFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARL
        HFNIVL  ++RLY+ L+++L P+  NC D RW+ F+NCLGALDGT+IKVNV A DRP +RT   ++
Subjt:  HFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARL

A0A5A7TWH8 Retrotransposon protein

3.9e-50

55.85

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CRE+TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFLLYAIKRVSSYSFLLDG
         HFN+VL A++RL++ LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +  T +L    R   + ++L G
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFLLYAIKRVSSYSFLLDG

A0A5A7TXW1 Retrotransposon protein

1.0e-50

59.3

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL+D LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

A0A5D3BDX0 Retrotransposon protein

3.0e-50

58.72

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Query:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS
        LL+ D  R    P   RH+IRQL +F++I+  D  CR++TRMDRR F ILC LLRT   +  T+ VDVEEMVA+FLHI+AHDVKNRV++ +F RSG+T+S
Subjt:  LLQLDDNRERSSPL-IRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVS

Query:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
        RHFN+VL A++RL++ LL+K +PV   CTD RWRWF+NCLGALDGT+IKVNV A+DR RYRT+   +    L
Subjt:  RHFNIVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

1.2e-06

29.17

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Query:  IYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSRHFNIVLNAILRLYDVLLR-----KLEP
        IY ++ +C+   RM    FT LC++L     ++ +  + ++E VAIFL I A +   R +  +F  + +T+ R F+ VL A+ RL    +R     +L  
Subjt:  IYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSRHFNIVLNAILRLYDVLLR-----KLEP

Query:  VIENCTDDR--WRWFQNCLG
        +     DD   W +  + LG
Subjt:  VIENCTDDR--WRWFQNCLG

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.4e-20

34.9

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Query:  FQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSRHFNIVLNAILRLYDVLLR--KLEP
        +Q++   ++ C EN RMD+  F  LC LL+T G +R+T  + +E  +AIFL I+ H+++ R ++  F  SG+T+SRHFN VLNA++ +     +      
Subjt:  FQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSRHFNIVLNAILRLYDVLLR--KLEP

Query:  VIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL
         +EN  DD   +F++C+G +D  HI V V   ++  +R  +  L +  L
Subjt:  VIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFL

Sequences

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CDS sequence

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ATGGTGAATACTATCACCACTTTGCTACAATTGGATGACAATCGGGAGCGATCGTCTCCACTAATTAGACATCAGATTCGACAGTTGAATTTCTTTCAACTGATCTACGA
AGATGATCAGACGTGTCGTGAGAACACTCGCATGGATAGGCGAACATTCACGATTCTGTGTCAATTACTTAGGACGACGGGTAGGATAAGGTACACGAAATATGTAGATG
TGGAGGAAATGGTGGCTATCTTCCTGCACATAGTCGCACACGATGTAAAAAATCGAGTGATGCGACACCAATTTGCAAGGTCTGGCAAGACGGTTTCCAGGCACTTCAAT
ATTGTGCTCAATGCAATATTGAGACTATACGACGTTCTATTGCGGAAACTAGAGCCAGTCATTGAAAATTGTACAGATGACAGATGGCGTTGGTTTCAGAATTGCTTAGG
TGCACTTGACGGAACCCACATAAAGGTAAATGTCAGTGCAGCTGATCGACCACGCTATAGGACTAAAAGCGCGAGATTGCAACGTACGTTCTTGCTGTATGCAATCAAAC
GTGTGAGTTCATATTCGTTTTTGCTGGATGGGAAGGATCAGCTGCTGACTCAAGGGTTCTGCGAGATGCAGTGTCCAAGCCAACTGGATTGA

mRNA sequence

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Protein sequence

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MVNTITTLLQLDDNRERSSPLIRHQIRQLNFFQLIYEDDQTCRENTRMDRRTFTILCQLLRTTGRIRYTKYVDVEEMVAIFLHIVAHDVKNRVMRHQFARSGKTVSRHFN
IVLNAILRLYDVLLRKLEPVIENCTDDRWRWFQNCLGALDGTHIKVNVSAADRPRYRTKSARLQRTFLLYAIKRVSSYSFLLDGKDQLLTQGFCEMQCPSQLD

Clc08G11175 (gene) of Watermelon (cordophanus) v2 genome