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Clc08G11775 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G11775
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome b6
Genome locationClcChr08:22972703..22973083
RNA-Seq ExpressionClc08G11775
SyntenyClc08G11775
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0022904 - respiratory electron transport chain (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR005797 - Cytochrome b/b6, N-terminal
IPR016174 - Di-haem cytochrome, transmembrane
IPR023530 - Cytochrome b6, PetB
IPR027387 - Cytochrome b/b6-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2017091.1 hypothetical protein ES319_D08G136700v1 [Gossypium barbadense]4.0e-3371.68Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV
        MTFYYR TVTEAFASVQ+IMTEANFGWLI+S+HRWS S                 VVLAVLTASFGVT YSLP DQ+GYWAVKIVTG+   I VIGSPLV
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV

Query:  ELLHGSTSVGQST
        ELL GS SVGQST
Subjt:  ELLHGSTSVGQST

KAB2629665.1 cytochrome b6 [Pyrus ussuriensis x Pyrus communis]1.8e-3375.23Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLH
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS +             VVL VLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLVELL 
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLH

Query:  GSTSVGQST
        GS SVGQST
Subjt:  GSTSVGQST

KAC9638027.1 hypothetical protein E3N88_45487 [Mikania micrantha]1.0e-3686.46Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLHGSTSVGQST
        MTFYYR TVT+AFASVQ+IMTEANFGWLIRS+HRWS SVVLAVLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLVELL GS SVGQST
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLHGSTSVGQST

QFV18175.1 cytochrome b6 [Helleborus thibetanus]6.9e-3367.46Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V  TI VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

TYJ27383.1 hypothetical protein E1A91_A07G183200v1 [Gossypium mustelinum]3.1e-3373.45Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                 VVL VLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLV
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV

Query:  ELLHGSTSVGQST
        ELL GS SVGQST
Subjt:  ELLHGSTSVGQST

TrEMBL top hitse value%identityAlignment
A0A5D2YMJ7 CYTB_NTER domain-containing protein1.5e-3373.45Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                 VVL VLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLV
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV

Query:  ELLHGSTSVGQST
        ELL GS SVGQST
Subjt:  ELLHGSTSVGQST

A0A5J5QJY0 CYTB_NTER domain-containing protein2.0e-3371.68Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV
        MTFYYR TVTEAFASVQ+IMTEANFGWLI+S+HRWS S                 VVLAVLTASFGVT YSLP DQ+GYWAVKIVTG+   I VIGSPLV
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-----------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLV

Query:  ELLHGSTSVGQST
        ELL GS SVGQST
Subjt:  ELLHGSTSVGQST

A0A5N5HPA2 Cytochrome b6 (Chloroplast)8.8e-3475.23Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLH
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS +             VVL VLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLVELL 
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS-------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLH

Query:  GSTSVGQST
        GS SVGQST
Subjt:  GSTSVGQST

A0A5N6L935 Uncharacterized protein5.0e-3786.46Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLHGSTSVGQST
        MTFYYR TVT+AFASVQ+IMTEANFGWLIRS+HRWS SVVLAVLTASFGVT YSLP DQIGYWAVKIVTGV   I VIGSPLVELL GS SVGQST
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLHGSTSVGQST

A0A5P9RWZ3 Cytochrome b63.3e-3367.46Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V  TI VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

SwissProt top hitse value%identityAlignment
Q06FN8 Cytochrome b63.4e-3566.67Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

Q06GN0 Cytochrome b61.5e-3566.67Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              V+LAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GSTSVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

Q06GW7 Cytochrome b63.4e-3566.67Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

Q8S8W0 Cytochrome b63.4e-3566.67Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

Q9MTJ5 Cytochrome b63.4e-3566.67Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVLAVLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

Arabidopsis top hitse value%identityAlignment
AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal9.1e-0726.19Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHR------------------------------WSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        +  +Y   V  AF SV+HIM +   GWL+R +H                               W   VV+ +L        Y LP  Q+ +W   ++T 
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHR------------------------------WSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        +   I V+G  +V  L G  SV  +T
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

ATCG00720.1 photosynthetic electron transfer B7.1e-3665.87Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        MTFYYR TVTEAFASVQ+IMTEANFGWLIRS+HRWS S                              VVL VLTASFGVT YSLP DQIGYWAVKIVTG
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPS------------------------------VVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        V   I VIGSPLVELL GS SVGQST
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST

ATMG00220.1 apocytochrome b9.1e-0726.19Show/hide
Query:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHR------------------------------WSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG
        +  +Y   V  AF SV+HIM +   GWL+R +H                               W   VV+ +L        Y LP  Q+ +W   ++T 
Subjt:  MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHR------------------------------WSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTG

Query:  VLGTILVIGSPLVELLHGSTSVGQST
        +   I V+G  +V  L G  SV  +T
Subjt:  VLGTILVIGSPLVELLHGSTSVGQST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTTTACTACCGTCAAACCGTTACTGAGGCTTTTGCTTCTGTTCAACATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAATTCATAGATGGTCGCC
AAGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACTAGTTATTCCTTACCTGGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACTGGGAA
CTATTTTAGTAATAGGGTCACCTTTGGTAGAGTTATTACACGGAAGTACTAGTGTGGGACAATCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTTTACTACCGTCAAACCGTTACTGAGGCTTTTGCTTCTGTTCAACATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAATTCATAGATGGTCGCC
AAGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACTAGTTATTCCTTACCTGGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACTGGGAA
CTATTTTAGTAATAGGGTCACCTTTGGTAGAGTTATTACACGGAAGTACTAGTGTGGGACAATCTACTTGA
Protein sequenceShow/hide protein sequence
MTFYYRQTVTEAFASVQHIMTEANFGWLIRSIHRWSPSVVLAVLTASFGVTSYSLPGDQIGYWAVKIVTGVLGTILVIGSPLVELLHGSTSVGQST