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Clc08G12410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G12410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPolynucleotide adenylyltransferase
Genome locationClcChr08:23681851..23682093
RNA-Seq ExpressionClc08G12410
SyntenyClc08G12410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444994.1 PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis melo]1.1e-0755.13Show/hide
Query:  VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR  PS    +GQQAD VCADM QDQSGITEKGKK K    ++  K  K   ++Q  E S
Subjt:  VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

XP_022132219.1 nuclear poly(A) polymerase 4-like isoform X1 [Momordica charantia]4.9e-0850.65Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++   ++ + L  +Q  + S
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

XP_022132220.1 nuclear poly(A) polymerase 2-like isoform X2 [Momordica charantia]4.9e-0850.65Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++   ++ + L  +Q  + S
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

XP_022996853.1 nuclear poly(A) polymerase 4-like isoform X1 [Cucurbita maxima]1.1e-0750.67Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE
        V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++   ++ +  +    EE
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE

XP_022996854.1 nuclear poly(A) polymerase 4-like isoform X2 [Cucurbita maxima]1.1e-0750.67Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE
        V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++   ++ +  +    EE
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE

TrEMBL top hitse value%identityAlignment
A0A1S3BCI7 Polynucleotide adenylyltransferase5.3e-0855.13Show/hide
Query:  VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR  PS    +GQQAD VCADM QDQSGITEKGKK K    ++  K  K   ++Q  E S
Subjt:  VPHVRGSNCPPLVFPDGHKR-WPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

A0A6J1BRU6 Polynucleotide adenylyltransferase2.4e-0850.65Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++   ++ + L  +Q  + S
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

A0A6J1BSG3 Polynucleotide adenylyltransferase2.4e-0850.65Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS
        V HVR    P  VFPDGHKR       +GQQAD VCADM QDQSGITEKGKK K+  ++   ++ + L  +Q  + S
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFS

A0A6J1K7X6 Polynucleotide adenylyltransferase5.3e-0850.67Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE
        V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++   ++ +  +    EE
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE

A0A6J1KC70 Polynucleotide adenylyltransferase5.3e-0850.67Show/hide
Query:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE
        V HVR    P  VFPDGHKR  S     GQQ D VCADM QDQSGITEKGKK K   ++   ++ +  +    EE
Subjt:  VPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCTCATGTACGAGGAAGCAACTGCCCACCTTTGGTTTTTCCTGATGGACACAAGCGGTGGCCAAGCCATCCAGGCATGAAGGGACAGCAAGCTGATGTA
GTTTGTGCTGATATGCCACAAGATCAATCTGGGATCACTGAGAAGGGAAAAAAAGGAAAAGTGATCATGAAGAAGAAGAGACGGAAAAGAAACAAGCCTTTATCA
GTCAACCAGCAGGAAGAATTCTCCCATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCTCATGTACGAGGAAGCAACTGCCCACCTTTGGTTTTTCCTGATGGACACAAGCGGTGGCCAAGCCATCCAGGCATGAAGGGACAGCAAGCTGATGTA
GTTTGTGCTGATATGCCACAAGATCAATCTGGGATCACTGAGAAGGGAAAAAAAGGAAAAGTGATCATGAAGAAGAAGAGACGGAAAAGAAACAAGCCTTTATCA
GTCAACCAGCAGGAAGAATTCTCCCATGCATGA
Protein sequenceShow/hide protein sequence
MVPHVRGSNCPPLVFPDGHKRWPSHPGMKGQQADVVCADMPQDQSGITEKGKKGKVIMKKKRRKRNKPLSVNQQEEFSHA