CuGenDBv2

Gene ID	Clc08G12545
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	LOB domain-containing protein
Genome location	ClcChr08:23766862..23767430
RNA-Seq Expression	Clc08G12545
Synteny	Clc08G12545
Gene Ontology terms	NA
InterPro domains	IPR004883 - Lateral organ boundaries, LOB

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014789.1 LOB domain-containing protein 24, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-45

70.75

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLR EAAESL       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+QEAQ  DFA +PI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

XP_004140854.1 LOB domain-containing protein 24 [Cucumis sativus]

4.9e-45

69.54

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP HLRAEAAE+L       IEDP+YGCVGI+SQLQ++LHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQE-AQPKDFAFEPILGPNN-----IGLSTPAHWFHSSLF
        TRAEIA + SNVQE  QP+DFAFEPI GPN+     IGLSTPAH F+S+ F
Subjt:  TRAEIALLPSNVQE-AQPKDFAFEPILGPNN-----IGLSTPAHWFHSSLF

XP_022923144.1 LOB domain-containing protein 24-like [Cucurbita moschata]

6.8e-47

71.43

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC+S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLR EAAESL       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+QEAQP DFA +PI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

XP_022985104.1 LOB domain-containing protein 24-like [Cucurbita maxima]

4.4e-46

71.62

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLRAEAAE+L       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNV-QEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+ QEAQP+DFA EPI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNV-QEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

XP_023522202.1 LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo]

1.2e-46

70.75

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLR EAAE+L       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+QEAQP+DFA +PI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9N7 LOB domain-containing protein

2.3e-45

69.54

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP HLRAEAAE+L       IEDP+YGCVGI+SQLQ++LHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQE-AQPKDFAFEPILGPNN-----IGLSTPAHWFHSSLF
        TRAEIA + SNVQE  QP+DFAFEPI GPN+     IGLSTPAH F+S+ F
Subjt:  TRAEIALLPSNVQE-AQPKDFAFEPILGPNN-----IGLSTPAHWFHSSLF

A0A0A0LLX6 LOB domain-containing protein

2.3e-40

67.81

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI  R   CKYL RRCSS CIFSP+FPS NPQRF  VH IYGASNV     Q+PM LR EAAE+L       IEDPIYGCVGI+SQLQY+LHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQPKDFAF-EPILGPNNIGLSTPAHWFHSSLF
        TRAEIALL SN Q+AQ +DF F +P  GP   GLSTPAH F   LF
Subjt:  TRAEIALLPSNVQEAQPKDFAF-EPILGPNNIGLSTPAHWFHSSLF

A0A1S3AY36 LOB domain-containing protein 24-like

1.2e-44

68.42

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP HLR EAAE+L       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQP--KDFAFEPILGPNN-----IGLSTPAHWFHSSLF
        TRAEIA + SNVQE QP  +DFAF+PI GPN+     IGLS+PAH F+SS F
Subjt:  TRAEIALLPSNVQEAQP--KDFAFEPILGPNN-----IGLSTPAHWFHSSLF

A0A6J1E5I6 LOB domain-containing protein 24-like

3.3e-47

71.43

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC+S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLR EAAESL       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+QEAQP DFA +PI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNVQEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

A0A6J1JCD0 LOB domain-containing protein 24-like

2.1e-46

71.62

Show/hide

Query:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK
        MI GR   CKYL RRC S CIFSPFFPS NPQRF  VH IYGASNV     QLP+HLRAEAAE+L       IEDP+YGCVGI+SQLQ+QLHVAETQLAK
Subjt:  MIYGRRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAK

Query:  TRAEIALLPSNV-QEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS
        TRAEIA L SN+ QEAQP+DFA EPI GPN      IGLSTPAHWF+S
Subjt:  TRAEIALLPSNV-QEAQPKDFAFEPILGPN-----NIGLSTPAHWFHS

SwissProt top hits

e value

%identity

Alignment

P59467 LOB domain-containing protein 23

2.7e-22

47.41

Show/hide

Query:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE
        R   CKYL RRC   C+FSP+FP  +PQ+F  VH IYGA NV     QLP   RAEA ESL       ++DP+YGCVGI+  L+ Q+   + +LAKT+AE
Subjt:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE

Query:  IALLPSNVQEAQPKDF
        IA+  + + +    DF
Subjt:  IALLPSNVQEAQPKDF

P59468 LOB domain-containing protein 24

5.4e-23

48.28

Show/hide

Query:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE
        R   CKYL RRC   C+FSP+FP  +PQ+F  VH IYGA NV     QLP   RAEA ESL       ++DP+YGCVGI+  L+ Q+   + +LAKT+AE
Subjt:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE

Query:  IALLPSNVQEAQPKDF
        IA+  + + + Q  DF
Subjt:  IALLPSNVQEAQPKDF

Q8LBW3 LOB domain-containing protein 12

2.6e-17

46.94

Show/hide

Query:  TCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEI
        +CK L RRC+  CIF+P+FP  +P +F  VH ++GASNV     +LP+H RA+A  SL       + DP+YGCVG +S LQ Q+   + QLA  +AEI
Subjt:  TCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEI

Q9FML4 Protein LATERAL ORGAN BOUNDARIES

2.9e-16

44.9

Show/hide

Query:  CKYLRR-CSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEA-------AESLIEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIA
        CK+LRR C  GCIF+P+FP + P +F +VH I+GASNV     +L  H R +A       AE+ + DP+YGCVG +S LQ Q+H  + +L    A++A
Subjt:  CKYLRR-CSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEA-------AESLIEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIA

Q9SHE9 LOB domain-containing protein 4

8.1e-19

Show/hide

Query:  CKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIALL
        CK L RRC+  C+FSP+FP+  PQ+F +VH ++GASNV     +LP+H R +A  S+       + DP+YGCVG +S LQ Q+ V + QLA  +AE+  L
Subjt:  CKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIALL

Arabidopsis top hits

e value

%identity

Alignment

AT1G31320.1 LOB domain-containing protein 4

5.8e-20

Show/hide

Query:  CKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIALL
        CK L RRC+  C+FSP+FP+  PQ+F +VH ++GASNV     +LP+H R +A  S+       + DP+YGCVG +S LQ Q+ V + QLA  +AE+  L
Subjt:  CKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIALL

AT2G30130.1 Lateral organ boundaries (LOB) domain family protein

1.9e-18

46.94

Show/hide

Query:  TCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEI
        +CK L RRC+  CIF+P+FP  +P +F  VH ++GASNV     +LP+H RA+A  SL       + DP+YGCVG +S LQ Q+   + QLA  +AEI
Subjt:  TCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAEI

AT3G26620.1 LOB domain-containing protein 23

1.9e-23

47.41

Show/hide

Query:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE
        R   CKYL RRC   C+FSP+FP  +PQ+F  VH IYGA NV     QLP   RAEA ESL       ++DP+YGCVGI+  L+ Q+   + +LAKT+AE
Subjt:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE

Query:  IALLPSNVQEAQPKDF
        IA+  + + +    DF
Subjt:  IALLPSNVQEAQPKDF

AT3G26660.1 LOB domain-containing protein 24

3.9e-24

48.28

Show/hide

Query:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE
        R   CKYL RRC   C+FSP+FP  +PQ+F  VH IYGA NV     QLP   RAEA ESL       ++DP+YGCVGI+  L+ Q+   + +LAKT+AE
Subjt:  RRTTCKYL-RRCSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEAAESL-------IEDPIYGCVGILSQLQYQLHVAETQLAKTRAE

Query:  IALLPSNVQEAQPKDF
        IA+  + + + Q  DF
Subjt:  IALLPSNVQEAQPKDF

AT5G63090.2 Lateral organ boundaries (LOB) domain family protein

2.0e-17

44.9

Show/hide

Query:  CKYLRR-CSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEA-------AESLIEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIA
        CK+LRR C  GCIF+P+FP + P +F +VH I+GASNV     +L  H R +A       AE+ + DP+YGCVG +S LQ Q+H  + +L    A++A
Subjt:  CKYLRR-CSSGCIFSPFFPSKNPQRFISVHLIYGASNV-----QLPMHLRAEA-------AESLIEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTTATGGCCGTCGTACAACTTGTAAATATTTAAGAAGATGCTCTTCCGGTTGTATTTTTTCCCCTTTCTTTCCTTCTAAAAATCCTCAAAGATTCATCAGC
GTTCATCTAATTTATGGTGCTAGCAACGTCCAACTTCCTATGCACCTACGAGCTGAAGCAGCAGAAAGTTTAATTGAAGATCCAATTTATGGATGTGTTGGAATT
CTCTCTCAATTGCAATATCAATTACACGTGGCAGAAACCCAGTTGGCGAAAACTCGAGCTGAGATTGCTTTGCTGCCTTCCAACGTTCAAGAAGCCCAACCCAAA
GATTTTGCATTTGAGCCCATTCTAGGCCCAAATAATATTGGGCTTTCCACTCCAGCCCATTGGTTTCATTCTAGCCTTTTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIYGRRTTCKYLRRCSSGCIFSPFFPSKNPQRFISVHLIYGASNVQLPMHLRAEAAESLIEDPIYGCVGILSQLQYQLHVAETQLAKTRAEIALLPSNVQEAQPK
DFAFEPILGPNNIGLSTPAHWFHSSLF

Clc08G12545 (gene) of Watermelon (cordophanus) v2 genome