; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G12640 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G12640
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationClcChr08:23879184..23882887
RNA-Seq ExpressionClc08G12640
SyntenyClc08G12640
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150286.1 exosome complex exonuclease RRP46 homolog [Cucumis sativus]1.4e-12293Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+ MKA VHLVFPN+ VSVVPE ST   GEPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAAT KMSAFLRRSLQPQLP +SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]1.6e-12393.42Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKA VHLVFPNS VSV+PE ST V GEPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAATAKMSAFLRRSLQPQLPTDSSK G
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]2.2e-12393.42Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKA VHLVFPNS VSV+PE ST V GEPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAATAKMSAFLRRSLQPQLPTDSSK G
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]1.8e-12292.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKA VHLVFPNS VSV+PE ST V GEPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAATAKMSAFLRRSLQPQLPTDSSK G
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

XP_038885208.1 exosome complex exonuclease RRP46 homolog [Benincasa hispida]6.7e-12595.06Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKAFVHLVFPNS VSVVPE S  V  EPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QG+MSVDDYILCLERG AA+AKMSAFLRRSLQPQLPTDSSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein6.7e-12393Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+ MKA VHLVFPN+ VSVVPE ST   GEPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAAT KMSAFLRRSLQPQLP +SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein3.3e-12292.59Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+ MKA VHLVFPN+ VSVVPE ST   GEPLEHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAAT KMSAFLRRSLQPQL  DSSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

A0A6J1BU99 exosome complex exonuclease RRP46 homolog isoform X12.6e-12293.39Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQ MKAFVHLVFPNS VSV+P+ ST V  EPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKA
        QGAMSVDDYI CLERGRAATAKMS FLRRSLQPQLP DSSKA
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKA

A0A6J1GI69 exosome complex exonuclease RRP46 homolog8.0e-12493.42Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKA VHLVFPNS VSV+PE ST V GEPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAATAKMSAFLRRSLQPQLPTDSSK G
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog1.0e-12393.42Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICIL  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQ MKA VHLVFPNS VSV+PE ST V GEPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
        QGAMSVDDYI CLERGRAATAKMSAFLRRSLQPQLPTDSSK G
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

SwissProt top hitse value%identityAlignment
Q17533 Putative exosome complex component RRP415.9e-1532.94Show/hide
Query:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER-----------ECEMILKRTLQSICI
        R DGR P Q+R +     +   A GS     G+TKVL AVYGP  G       +K +I  + +    +   LER           E   +L++  +S+ +
Subjt:  RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER-----------ECEMILKRTLQSICI

Query:  LNANPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNM
          A P +   I  +VI  DG+ L   +NA+  AL DAGIP+K +A A +C + + G  I+D T  EE ++
Subjt:  LNANPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNM

Q84T68 Exosome complex exonuclease RRP46 homolog2.5e-8265.13Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+L  +PNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+ +DG+LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ +K+F HLVFPNS  S   +     E E  E G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTD
         G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTD

Q9CRA8 Exosome complex component RRP463.1e-3235.62Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +   +P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E+  +A +     ++                 E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCL

Query:  ERGRAATAKMSAFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSAFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog1.0e-10475.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

Q9NQT4 Exosome complex component RRP468.2e-3337.44Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +   +P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E+  +A   L F   SV               E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCL

Query:  ERGRAATAKMSAFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSAFLRRSLQ

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein7.4e-10675.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein7.4e-10675.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein7.4e-10675.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein7.4e-10675.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein7.4e-10675.31Show/hide
Query:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT
        MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+L  NPNT
Subjt:  MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+ M AF +LVFPN+++SV+PE S+  EGEP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVT

Query:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG
         G MSVDDY LC+E GRAATA +SAF R++ Q      SSKAG
Subjt:  QGAMSVDDYILCLERGRAATAKMSAFLRRSLQPQLPTDSSKAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAGACAGAGATGATGGTCGCACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGA
TACGAAGGTTCTTGCTGCAGTTTATGGACCTAAAGCGGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGGCAGATTG
GAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACGTTGCAGAGTATTTGCATATTAAATGCTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCCCTTGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCCTGTTGTTTGTCTGA
GAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAACATGAAGGCATTTGTACATTTGGTCTTCCCAAACTCATCTGTCTCAGTAGTTCCTGAAAGATCTA
CACACGTTGAAGGTGAACCACTGGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCTCTGCCTGGAACGGGGGCGTGCTGCTACT
GCAAAAATGTCTGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
CCTACTTACCCTTGTAATTAAGAAAAGGAAAAGACAGTTTTGCCCTAGTCTCTTCTTCTCTCTCGGTCTCTCTCAGTCCTTCTCCGAGTATCCTCAGACCCGGCGGCGGC
GCCCAAAATCTCTCCACCTCTCTGGTTTCTCTCCTTCGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTATTCACTTTCTCTTCTCTCTTCACCGGCTCTTCGT
TGTAGTTCAGCGGCTTCCTCACTCCATCGCAAGAAACCGAAATCCGACTAGTTTGAATTCATCTCAATTTCTTCTTTTCCTTTCTAGTCTTTCGAACCCACCGAAGAAGG
GCCATGGAGATAGACAGAGATGATGGTCGCACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGG
CGATACGAAGGTTCTTGCTGCAGTTTATGGACCTAAAGCGGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGGCAGA
TTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACGTTGCAGAGTATTTGCATATTAAATGCTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATT
CATGATGATGGAGCTCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCCCTTGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCCTGTTGTTTGTC
TGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAACATGAAGGCATTTGTACATTTGGTCTTCCCAAACTCATCTGTCTCAGTAGTTCCTGAAAGAT
CTACACACGTTGAAGGTGAACCACTGGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCTCTGCCTGGAACGGGGGCGTGCTGCT
ACTGCAAAAATGTCTGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGCTGGCTGATCGGATGCAAGTTCTTGCAGTACTGTGCTCTATGA
CTAAATCAGGCTGGAAGGTACCATCTAATGTATGATTTATTTTTCCGTAACACCAAATCCATGCTAGTTGAGTCTTTAAGGGCTTTTTGTAACCCAGTGATGTAACAGAG
CATCGTCCAAAGTGGATTTGATTGGTGCATTGTACGTTTACATTCTTTTACCCCTTTTTTCGGAATGCAATTTGTTACATATTCCAAATTCAAAATGATTATATCGTTCA
AAAGAGAATGAACAGAGGAGTGAAGGCTCAAGATTGATTTAGGAATCTTTGTAGGTGCCTCTCTCTTTAGTAGGGAAGGGTGAACCAGATATAGGAATCTTTGTGGGTAT
CTCCACTCAATATAAGGTCAAGGGTTCAATCCATGGTGGCTACCTACATAGGAATTAATTTCCTACGAGTTTCCTGGACCCCAAAT
Protein sequenceShow/hide protein sequence
MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIH
DDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCLERGRAAT
AKMSAFLRRSLQPQLPTDSSKAG