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Clc08G13690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G13690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUPF0481 protein At3g47200-like
Genome locationClcChr08:24785846..24786237
RNA-Seq ExpressionClc08G13690
SyntenyClc08G13690
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022961893.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata]1.8e-3362.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

XP_022961896.1 UPF0481 protein At3g47200-like isoform X2 [Cucurbita moschata]1.8e-3362.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

XP_022961897.1 UPF0481 protein At3g47200-like isoform X3 [Cucurbita moschata]1.8e-3362.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

XP_023546101.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo]7.9e-3462.9Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCH-AGEMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S K  F  TFWPP ATQLHECGV+F+T KG        C       IYD F+ RVRNLIAYEQCH   E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCH-AGEMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

XP_023546104.1 UPF0481 protein At3g47200-like isoform X2 [Cucurbita pepo subsp. pepo]7.9e-3462.9Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCH-AGEMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S K  F  TFWPP ATQLHECGV+F+T KG        C       IYD F+ RVRNLIAYEQCH   E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCH-AGEMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

TrEMBL top hitse value%identityAlignment
A0A6J1HBC3 UPF0481 protein At3g47200-like isoform X38.5e-3462.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

A0A6J1HBD2 UPF0481 protein At3g47200-like2.0e-2249.19Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSK-----KCAVDVATAIYDGFKTRVRNLIAYEQCHA-GEMRDEVSNFAVFMQY
        +V+H VD +R   T   S +      FWPPTAT+LHECGV+FRT    K      C      +I D F+ RVRN+IAYEQCH   E+R+ V+NF  FMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSK-----KCAVDVATAIYDGFKTRVRNLIAYEQCHA-GEMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +V++ QD+KLL+E GII N LG I
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

A0A6J1HBL7 UPF0481 protein At3g47200-like isoform X28.5e-3462.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

A0A6J1HD16 UPF0481 protein At3g47200-like4.7e-2453.66Show/hide
Query:  VNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSK-----KCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQYI
        V H VD V    T   S +    R  WP  AT+LHECGV+FR+  G +      C       IYD F+ RVRNLIAYEQCH G E+R+ VSNFAVFMQ +
Subjt:  VNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSK-----KCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQYI

Query:  VQTEQDVKLLVEAGIIQNNLGSI
        VQ++QDVKLL+E GII+N LG I
Subjt:  VQTEQDVKLLVEAGIIQNNLGSI

A0A6J1HD53 UPF0481 protein At3g47200-like isoform X18.5e-3462.1Show/hide
Query:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY
        +VNH VD +R HFTH+ S +T F  TFWPP AT+LHECGV+F+  KG        C       IYD F+ RVRNLIAYEQCH G E+R+EVSNFAVFMQ 
Subjt:  KVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKG-----SKKCAVDVATAIYDGFKTRVRNLIAYEQCHAG-EMRDEVSNFAVFMQY

Query:  IVQTEQDVKLLVEAGIIQNNLGSI
        +VQT+QDVKLL+E GII NN GSI
Subjt:  IVQTEQDVKLLVEAGIIQNNLGSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50120.1 Plant protein of unknown function (DUF247)1.0e-0733.33Show/hide
Query:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS
        T+L E G+ FR  K  +   +             I+DG K+   NLIA+EQCH     D ++++ +FM  ++ + +DV  L   GII++ LGS
Subjt:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS

AT3G50130.1 Plant protein of unknown function (DUF247)1.6e-0833.33Show/hide
Query:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS
        T+L E G+ FRT K  +   +             I+DG K+   NLIA+EQCH     D ++++ +FM  ++ + +DV+ L   GII++ LG+
Subjt:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS

AT3G50140.1 Plant protein of unknown function (DUF247)2.3e-0731.18Show/hide
Query:  TQLHECGVVFRTDKGSK--------KCAVDVATAIYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS
        T+L E G+ F+  K  +         C       I+DG K+   NLIAYEQCH     D ++++ +FM  ++ + +D++ L    II++ LG+
Subjt:  TQLHECGVVFRTDKGSK--------KCAVDVATAIYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS

AT3G50170.1 Plant protein of unknown function (DUF247)2.1e-0834.41Show/hide
Query:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS
        T+L E GV FR  K  +   ++            I+DG K+   NLIA+EQCH  E  + ++++ +FM  ++ + +DV  L   GII++ LGS
Subjt:  TQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS

AT3G50180.1 Plant protein of unknown function (DUF247)1.9e-0931.25Show/hide
Query:  PTATQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS
        PT T+L + G  F+ +K  +   +  +          I+DG K+   NLIA+EQCH  E  ++++++ +FM  ++ + +D+  L   GII+++LGS
Subjt:  PTATQLHECGVVFRTDKGSKKCAVDVATA--------IYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGCAAAGTGAATCATCTTGTTGATTTTGTAAGAACGCACTTCACTCATTCTTGTTCCACTAAAACGTTGTTCCACCGCACGTTTTGGCCGCCGACTGCG
ACCCAGCTTCACGAATGCGGTGTTGTTTTCAGAACGGACAAGGGGAGCAAGAAATGCGCTGTGGACGTAGCAACTGCCATATACGACGGCTTTAAAACACGTGTG
AGGAACTTGATAGCTTACGAGCAATGCCATGCTGGAGAAATGAGGGATGAAGTGAGCAACTTTGCTGTGTTTATGCAATACATAGTCCAAACAGAGCAAGACGTG
AAATTGCTGGTTGAGGCTGGGATCATACAGAACAACTTGGGCAGTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGCAAAGTGAATCATCTTGTTGATTTTGTAAGAACGCACTTCACTCATTCTTGTTCCACTAAAACGTTGTTCCACCGCACGTTTTGGCCGCCGACTGCG
ACCCAGCTTCACGAATGCGGTGTTGTTTTCAGAACGGACAAGGGGAGCAAGAAATGCGCTGTGGACGTAGCAACTGCCATATACGACGGCTTTAAAACACGTGTG
AGGAACTTGATAGCTTACGAGCAATGCCATGCTGGAGAAATGAGGGATGAAGTGAGCAACTTTGCTGTGTTTATGCAATACATAGTCCAAACAGAGCAAGACGTG
AAATTGCTGGTTGAGGCTGGGATCATACAGAACAACTTGGGCAGTATCTAA
Protein sequenceShow/hide protein sequence
MDGKVNHLVDFVRTHFTHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSKKCAVDVATAIYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDV
KLLVEAGIIQNNLGSI