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Clc08G14860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G14860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGibberellin-regulated protein 2
Genome locationClcChr08:25772690..25773467
RNA-Seq ExpressionClc08G14860
SyntenyClc08G14860
Gene Ontology termsGO:0050896 - response to stimulus (biological process)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444802.1 PREDICTED: snakin-2-like [Cucumis melo]1.8e-4186.6Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+IL+KAL ASL LSLLFLH VES+ VGL+P SPQKMDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_022951559.1 snakin-2-like [Cucurbita moschata]2.4e-4184.54Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MAI SKALIASL LSLLFLHSVES    ++ PSPQKMDCGGACA RC+LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_023002563.1 snakin-2-like [Cucurbita maxima]1.4e-4185.57Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MAI SKALIASL LSLLFLHSVES    ++ PSPQKMDCGGACA RC+LSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886088.1 snakin-2-like isoform X1 [Benincasa hispida]3.0e-4490.91Show/hide
Query:  MAILSKALIASLFLSLLFLHS--VESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+  SKALIASLFLSLLFLHS  VESN VGLIPPSPQKMDCGGACAGRC+LSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHS--VESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886089.1 snakin-2-like isoform X2 [Benincasa hispida]9.4e-4692.78Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+  SKALIASLFLSLLFLHSVESN VGLIPPSPQKMDCGGACAGRC+LSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LNS5 Uncharacterized protein3.4e-4184.54Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M IL+K L ASL LSLLFLH VESN VGL+PP+P++MDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A1S3BBY7 snakin-2-like8.9e-4286.6Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+IL+KAL ASL LSLLFLH VES+ VGL+P SPQKMDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1CRW3 snakin-2-like1.0e-3471.56Show/hide
Query:  MAILSKALIAS--LFLSLLFLHS---------VES-NAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT
        M++ SK LI +  L  SLLFLH+         VES +  G+ P +P KMDCGGACAGRC+LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT
Subjt:  MAILSKALIAS--LFLSLLFLHS---------VES-NAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT

Query:  THGGRLKCP
        THGGR KCP
Subjt:  THGGRLKCP

A0A6J1GJ50 snakin-2-like1.2e-4184.54Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MAI SKALIASL LSLLFLHSVES    ++ PSPQKMDCGGACA RC+LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1KTY1 snakin-2-like6.8e-4285.57Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MAI SKALIASL LSLLFLHSVES    ++ PSPQKMDCGGACA RC+LSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 111.2e-2458.7Show/hide
Query:  KALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        + L+ASL +SLL L  V ++ V        K+DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  KALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46687 Gibberellin-regulated protein 33.9e-2657.84Show/hide
Query:  MAILSKALIASLFLSL-----LFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        MAI    L+  L L       L +H+ E + VG       K+DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLK
Subjt:  MAILSKALIASLFLSL-----LFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

P46688 Gibberellin-regulated protein 26.2e-2453.54Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAV--GLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MA+    L+  L +  L  + +  +A     +     K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAV--GLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46689 Gibberellin-regulated protein 11.6e-2761.46Show/hide
Query:  LSKALIASLFLSLLFLHSVESNAVGLIPPS--PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        +SKALIASL +SLL L  V+++       +   +K+DCG AC  RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  LSKALIASLFLSLLFLHSVESNAVGLIPPS--PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

Q93X17 Snakin-21.4e-3165.69Show/hide
Query:  LSKALIASLFLSLLFLHSVE--------SNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        +SKAL ASL LSLL L  V+        SNA+     S +K+DCGGACA RC+LSSRPRLCNRACGTCC RCNCVPPGTSGN   CPCYA++TTHG + K
Subjt:  LSKALIASLFLSLLFLHSVE--------SNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 11.1e-2861.46Show/hide
Query:  LSKALIASLFLSLLFLHSVESNAVGLIPPS--PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        +SKALIASL +SLL L  V+++       +   +K+DCG AC  RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  LSKALIASLFLSLLFLHSVESNAVGLIPPS--PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT1G75750.2 GAST1 protein homolog 12.5e-2862.11Show/hide
Query:  LSKALIASLFLSLLFLHSVESNAVGLIPPS-PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        +SKALIASL +SLL L  V+++          +K+DCG AC  RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  LSKALIASLFLSLLFLHSVESNAVGLIPPS-PQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT2G18420.1 Gibberellin-regulated family protein8.8e-2658.7Show/hide
Query:  KALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        + L+ASL +SLL L  V ++ V        K+DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  KALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT4G09600.1 GAST1 protein homolog 32.7e-2757.84Show/hide
Query:  MAILSKALIASLFLSL-----LFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        MAI    L+  L L       L +H+ E + VG       K+DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLK
Subjt:  MAILSKALIASLFLSL-----LFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

AT4G09610.1 GAST1 protein homolog 24.4e-2553.54Show/hide
Query:  MAILSKALIASLFLSLLFLHSVESNAV--GLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MA+    L+  L +  L  + +  +A     +     K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Subjt:  MAILSKALIASLFLSLLFLHSVESNAV--GLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCCTCTCCAAAGCTCTCATTGCTTCCCTCTTCCTCTCTCTGCTTTTCCTCCACTCTGTGGAATCCAACGCCGTGGGTTTAATCCCTCCAAGTCCTCAGAAAAT
GGACTGCGGCGGCGCGTGTGCTGGGAGGTGCAAGTTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGTGGGACGTGCTGTCAGCGTTGCAACTGCGTTCCGCCGGGGA
CTTCCGGTAACCACCATCTCTGCCCCTGCTACGCCGCCATGACCACCCACGGTGGCCGCCTGAAGTGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAATTCCATTTCTCCTTGCATTGCATTACATTCTAATTTCTATCCTGCCCCAGTTCCCACCCACTCCTCTGTTCACTTGACCACAAAGGCTTAGCTTTTTGCTATAAAA
ATAACCCTTTCTATCAGTGATTTCTCAAAATATTATCCATCCAATTCAAAATCCCTAAAAAACCATGGCCATCCTCTCCAAAGCTCTCATTGCTTCCCTCTTCCTCTCTC
TGCTTTTCCTCCACTCTGTGGAATCCAACGCCGTGGGTTTAATCCCTCCAAGTCCTCAGAAAATGGACTGCGGCGGCGCGTGTGCTGGGAGGTGCAAGTTGTCGTCGAGG
CCGAGGCTGTGCAATAGAGCGTGTGGGACGTGCTGTCAGCGTTGCAACTGCGTTCCGCCGGGGACTTCCGGTAACCACCATCTCTGCCCCTGCTACGCCGCCATGACCAC
CCACGGTGGCCGCCTGAAGTGCCCTTAAAGTGCCGTTGACCGTTGACCACCTCAGTAGATTATCATAAACTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGGATG
TACACTTTGTGGTGTTTTCTTCTTTTTATGCATATACAAATAAAACTAATTGACTATTTTGGTGTTTTTTTT
Protein sequenceShow/hide protein sequence
MAILSKALIASLFLSLLFLHSVESNAVGLIPPSPQKMDCGGACAGRCKLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP