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Clc08G14980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G14980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionXylanolytic transcriptional activator xlnR like
Genome locationClcChr08:25890263..25892901
RNA-Seq ExpressionClc08G14980
SyntenyClc08G14980
Gene Ontology termsNA
InterPro domainsIPR039632 - Transmembrane protein 42


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598488.1 hypothetical protein SDJN03_08266, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4258.79Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEG+KG KGY+WAISAG NAAFAAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LI++GVLILN+SSIEKKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

XP_022144157.1 uncharacterized protein LOC111013916 [Momordica charantia]6.3e-4360.44Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEGKKG KGYVWAISAGFNAA AAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        R+GLVIAFNLAMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKE+KD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

XP_022961823.1 uncharacterized protein LOC111462473 [Cucurbita moschata]2.4e-4259.34Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEG+KG KGY+WAISAG NAAFAAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVLILN+SSIEKKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

XP_022997366.1 uncharacterized protein LOC111492304 [Cucurbita maxima]6.3e-4359.89Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEG+KG KGY+WAISAG NAAFAAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGA+LIV+GVLILN+SSIEKKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

XP_038885716.1 multidrug resistance protein EbrB isoform X2 [Benincasa hispida]5.3e-4259.89Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEGKKGNKGY WAI+AG NAAF+AIAAKLFSYT                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLV+AFNLAMWGCYVNSLK LSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGALLIVIGVLILNKSSI KKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

TrEMBL top hitse value%identityAlignment
A0A0A0LPF1 Uncharacterized protein1.3e-4160.67Show/hide
Query:  KGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLIRYGL
        +G+KGYVWAISAG NAAFAAIAAKLFSYT                                                                 LIRY L
Subjt:  KGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLIRYGL

Query:  VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGALLIVIGVLILNKSSIEKKESKD
Subjt:  VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

A0A1S3BB59 multidrug resistance protein EbrB6.3e-4158.99Show/hide
Query:  KGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLIRYGL
        +G+KGYVWAISAG NAA +AIAAKLFSYT                                                                   RYGL
Subjt:  KGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLIRYGL

Query:  VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGA+LIVIGVLILNKSSIEKKESKD
Subjt:  VIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

A0A6J1CSW2 uncharacterized protein LOC1110139163.0e-4360.44Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEGKKG KGYVWAISAGFNAA AAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        R+GLVIAFNLAMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKE+KD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

A0A6J1HCY1 uncharacterized protein LOC1114624731.2e-4259.34Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEG+KG KGY+WAISAG NAAFAAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+GVLILN+SSIEKKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

A0A6J1K7A2 uncharacterized protein LOC1114923043.0e-4359.89Show/hide
Query:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI
        MEG+KG KGY+WAISAG NAAFAAIAAKLFS T                                                                 LI
Subjt:  MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLI

Query:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGA+LIV+GVLILN+SSIEKKESKD
Subjt:  RYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30845.1 unknown protein1.4e-2770.24Show/hide
Query:  LIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD
        +I+YGLV+  N+ MW CYVNSL+ALSSLQAT TNF+ANFL SGLAG FLF+E+LSF+WF GAL I  GVLIL+KSS++KK S D
Subjt:  LIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGAAAAAGGGGAATAAGGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGCTGTTGGAAGT
GCAAGTTAGCAATCTGAGTACATTTTCCCCCCACCCCCACCCGGTCAATTCAGAGTACAAAGAAAGTGTCCTAGCAACTCTTTCAAGTCCAGGTATTTGCTTGATCCGCA
TAAATTCAAGAACTTGTCAAAATTTAGTGGATCAAAGATGTAATCTAAAATTGTGGTATAAACGAAACGAAAAGTTAATTAGGTATGGATTGGTAATTGCGTTCAACTTG
GCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGGACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTT
GTTTGAAGAAGCATTATCATTTCAGTGGTTTGTAGGTGCCTTATTAATTGTAATTGGCGTGCTGATTTTGAATAAGTCGAGCATTGAGAAGAAGGAAAGCAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
CAACAACCCAAAGAGGGGAACTTTTTACTCTGTAAATGGAAGGGAAAAAGGGGAATAAGGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATT
GCCGCCAAGCTTTTCTCCTATACGCTGTTGGAAGTGCAAGTTAGCAATCTGAGTACATTTTCCCCCCACCCCCACCCGGTCAATTCAGAGTACAAAGAAAGTGTCCTAGC
AACTCTTTCAAGTCCAGGTATTTGCTTGATCCGCATAAATTCAAGAACTTGTCAAAATTTAGTGGATCAAAGATGTAATCTAAAATTGTGGTATAAACGAAACGAAAAGT
TAATTAGGTATGGATTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGGACAAACTTTTCAGCT
AACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTTGAAGAAGCATTATCATTTCAGTGGTTTGTAGGTGCCTTATTAATTGTAATTGGCGTGCTGATTTTGAATAA
GTCGAGCATTGAGAAGAAGGAAAGCAAGGACTGAACTTTGCTCTTAGTTTGTCATCAATCATTTCATCGCGTAGCCTCCTTGCCTTCGAACATGAAAGAATTCTCTGGTT
CTTGAAAGAAATGGGACATCACTTTGCAATGTGTACGAAATCAAGCCGTTTGAAATTATAGCAGGGCAGGCCCATCAACGGTGGACATTGTTCTCGACGTGCAGGTGGAT
TAACGAGGTAGTTTCTTATGGTGTTAGCAAATGAGACGTGAATTGAAGAAGTATCAATCTGCTCAAGTTTTCTTAGTTTGGCATTTAGAATTGCTCACGTTCTGTCTGGT
AAGGAATGCTCTTCATTCTTCTGCACAAATGTTTATCTACTTGTAGAAATGCATTTGATAAAGATTTGGTTTAATTTTTTCTATCTTCAAAATTTATGCTT
Protein sequenceShow/hide protein sequence
MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLLEVQVSNLSTFSPHPHPVNSEYKESVLATLSSPGICLIRINSRTCQNLVDQRCNLKLWYKRNEKLIRYGLVIAFNL
AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGALLIVIGVLILNKSSIEKKESKD