; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G15520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G15520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein RADIALIS-like 4
Genome locationClcChr08:26322756..26325014
RNA-Seq ExpressionClc08G15520
SyntenyClc08G15520
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]6.0e-4294.62Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQR
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+V NGS Y DEQR
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]2.6e-4594.06Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKPI  NGS Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]3.1e-4695.05Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+V NGS Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]1.3e-4491.09Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]2.1e-4798.02Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGS Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein1.3e-4594.06Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKPI  NGS Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 41.5e-4695.05Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+V NGS Y DEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VC75 Protein RADIALIS-like 42.9e-4294.62Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQR
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKP+V NGS Y DEQR
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQR

A0A6J1HFA3 protein RADIALIS-like 46.2e-4591.09Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 46.2e-4591.09Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+ YGDEQRLMKNLKL
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.0e-2456.73Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYG---DEQRLMKN
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+   S G   G    E++ M+N
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYG---DEQRLMKN

Query:  LKLQ
        ++LQ
Subjt:  LKLQ

Q1A173 Protein RADIALIS-like 65.6e-2762.77Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD-EQRLMKNLKL
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD-EQRLMKNLKL

Q6NNN0 Protein RADIALIS-like 31.6e-2159.09Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEY
        MAS+S     SSS+SWT K+NK FE AL  Y +DTPDRW  VARAVGGK+AEEV+RHY++L++D+  IESG+ P PNY+   SNG+ +
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEY

Q8GW75 Protein RADIALIS-like 54.8e-2660.58Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ---RLMKN
        MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK +       G +    RLMKN
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ---RLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

Q9SIJ5 Protein RADIALIS-like 22.0e-2456.31Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIV--SNGSEYGDEQRLMKNL
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK     SN     DE++ M+++
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIV--SNGSEYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.4e-2760.58Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ---RLMKN
        MASSS     SSSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDIL++DLM+IE   VPLP YK +       G +    RLMKN
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDEQ---RLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

AT1G75250.1 RAD-like 66.4e-2663.86Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK   SN     D
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD

AT1G75250.2 RAD-like 64.0e-2862.77Show/hide
Query:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD-EQRLMKNLKL
        +S SS S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGD-EQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein1.4e-2556.31Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIV--SNGSEYGDEQRLMKNL
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK     SN     DE++ M+++
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIV--SNGSEYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

AT4G39250.1 RAD-like 11.4e-2556.73Show/hide
Query:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYG---DEQRLMKN
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+   S G   G    E++ M+N
Subjt:  MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYG---DEQRLMKN

Query:  LKLQ
        ++LQ
Subjt:  LKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACGACCATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATCATGGCATCGAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCATGGACGCT
TAAACAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCAGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAA
AAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCCAACTACAAGCCCATTGTTTCCAACGGTTCGGAGTATGGTGATGAG
CAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAACGACCATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATCATGGCATCGAGCTCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCATGGACGCT
TAAACAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCCGAGGACACACCAGATCGGTGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAA
AAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCCAACTACAAGCCCATTGTTTCCAACGGTTCGGAGTATGGTGATGAG
CAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTATTATACCAACGATATAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGGTG
TCAGTGTTTCTCTACTTTCCCGCTCTGTTTGTCCCTTCTAGCATATATTGCTAAAGTATTGTAACCTGTGAAGCGAACTAAACTATTGTAAGTTGTAACCTGTTTGTTCA
TGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATTCGCTTTCCAAT
Protein sequenceShow/hide protein sequence
MVTTISSPFKTFHPNFLYIMASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPIVSNGSEYGDE
QRLMKNLKLQ