; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G16167 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G16167
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpolyadenylate-binding protein RBP47-like
Genome locationClcChr08:26757561..26758629
RNA-Seq ExpressionClc08G16167
SyntenyClc08G16167
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152729.1 polyadenylate-binding protein RBP47 [Cucumis sativus]1.1e-2249.62Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DLKQLFSQHG+IVSVK+PVGKGCGFIQFANR      +     T+I     +  +      + YR DYGNHWSGAYY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y   +       GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

XP_008444645.1 PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo]3.7e-2350.38Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DLKQLFSQHG+IVSVK+PVGKGCGFIQFANR      +     T+I     +  +      + YRADYGNHWSGAYY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y   +       GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

XP_022144139.1 polyadenylate-binding protein RBP47-like [Momordica charantia]7.0e-2247.33Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DL+QLFSQHGDIVSVK+PVGKGCGFIQFANR      +      +I     +  +      + YRADY NHW+G YY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y           GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

XP_023002570.1 polyadenylate-binding protein RBP47-like [Cucurbita maxima]8.5e-2047.73Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN-----YRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT+DDL+QLFSQHGDIVSVK+P+GKGCGFIQFANR      +  +  T        L + R+     +RADY N WSGA Y    M     
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN-----YRADYGNHWSGAYYEDKCMAN---

Query:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN
               D    Y           GTHQQQV+
Subjt:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN

XP_038885237.1 polyadenylate-binding protein RBP47-like [Benincasa hispida]9.7e-2453.79Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN--
        IFIGGLDPNVT+DDLKQLFSQHGDIVSVK+PVGKGCGFIQFANR      L    GI I   T    +       + YRADYGNHWSGAYY  +      
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN--

Query:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN
               D    Y   +       GTHQQQVN
Subjt:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN

TrEMBL top hitse value%identityAlignment
A0A0A0LP64 Uncharacterized protein5.2e-2349.62Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DLKQLFSQHG+IVSVK+PVGKGCGFIQFANR      +     T+I     +  +      + YR DYGNHWSGAYY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y   +       GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

A0A1S3BBK1 polyadenylate-binding protein RBP47-like1.8e-2350.38Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DLKQLFSQHG+IVSVK+PVGKGCGFIQFANR      +     T+I     +  +      + YRADYGNHWSGAYY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y   +       GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

A0A5A7V0L8 Polyadenylate-binding protein RBP47-like1.8e-2350.38Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DLKQLFSQHG+IVSVK+PVGKGCGFIQFANR      +     T+I     +  +      + YRADYGNHWSGAYY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y   +       GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

A0A6J1CRE8 polyadenylate-binding protein RBP47-like3.4e-2247.33Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT++DL+QLFSQHGDIVSVK+PVGKGCGFIQFANR      +      +I     +  +      + YRADY NHW+G YY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMAN---

Query:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN
              D    Y           GTHQQQVN
Subjt:  -----MDTLCRYLMIHQPCMQQQGTHQQQVN

A0A6J1KPB2 polyadenylate-binding protein RBP47-like4.1e-2047.73Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN-----YRADYGNHWSGAYYEDKCMAN---
        IFIGGLDPNVT+DDL+QLFSQHGDIVSVK+P+GKGCGFIQFANR      +  +  T        L + R+     +RADY N WSGA Y    M     
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN-----YRADYGNHWSGAYYEDKCMAN---

Query:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN
               D    Y           GTHQQQV+
Subjt:  ------MDTLCRYLMIHQPCMQQQGTHQQQVN

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A2.3e-1546.67Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY
        IF+GGLD +VT +DL Q FS  G++VSVK+PVGKGCGF+QFANR      +G+  G  I   T    +       + +R+D GN W+G Y
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY

Q0WW84 Polyadenylate-binding protein RBP47B3.8e-1545.45Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN----YRADYGNHWSGAY
        IF+GG+DP+V ++DL+Q FSQ G++VSVK+PVGKGCGF+QFA+R      I  +  T        L + R+    +R D G  W+G Y
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN----YRADYGNHWSGAY

Q9LEB3 Polyadenylate-binding protein RBP472.1e-1340.45Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY
        IF+GGLD  VT+++L+Q F+Q G++VSVK+P GKGCGF+QF++R      I      II     +  +      +  R D G+ W+G Y
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY

Q9SX79 Polyadenylate-binding protein RBP47C1.5e-1436.64Show/hide
Query:  MCVKIFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMA
        M   IF+GGLD +VT++DLKQ F++ G+IVSVK+PVGKGCGF+QF NR      +     T+I     +  +      +  R  YGN W   YY  +   
Subjt:  MCVKIFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMA

Query:  NMDTLCRY----LMIHQPCMQQQGTHQQQVN
            +       +    P     G HQQQV+
Subjt:  NMDTLCRY----LMIHQPCMQQQGTHQQQVN

Q9SX80 Polyadenylate-binding protein RBP47C'1.1e-1437.8Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMANMDT
        IF+GGLD +VT++DLKQ FS+ G+IVSVK+PVGKGCGF+QF NR      +     T+I     +  +      +  R  YGN W   YY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMANMDT

Query:  LCRY----LMIHQPCMQQQGTHQQQVN
        +       +    P     G HQQQV+
Subjt:  LCRY----LMIHQPCMQQQGTHQQQVN

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C1.0e-1536.64Show/hide
Query:  MCVKIFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMA
        M   IF+GGLD +VT++DLKQ F++ G+IVSVK+PVGKGCGF+QF NR      +     T+I     +  +      +  R  YGN W   YY  +   
Subjt:  MCVKIFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMA

Query:  NMDTLCRY----LMIHQPCMQQQGTHQQQVN
            +       +    P     G HQQQV+
Subjt:  NMDTLCRY----LMIHQPCMQQQGTHQQQVN

AT1G47500.1 RNA-binding protein 47C'8.0e-1637.8Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMANMDT
        IF+GGLD +VT++DLKQ FS+ G+IVSVK+PVGKGCGF+QF NR      +     T+I     +  +      +  R  YGN W   YY  +       
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGI-----TIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMANMDT

Query:  LCRY----LMIHQPCMQQQGTHQQQVN
        +       +    P     G HQQQV+
Subjt:  LCRY----LMIHQPCMQQQGTHQQQVN

AT1G49600.1 RNA-binding protein 47A1.6e-1646.67Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY
        IF+GGLD +VT +DL Q FS  G++VSVK+PVGKGCGF+QFANR      +G+  G  I   T    +       + +R+D GN W+G Y
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANR------LGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAY

AT3G19130.1 RNA-binding protein 47B2.7e-1645.45Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN----YRADYGNHWSGAY
        IF+GG+DP+V ++DL+Q FSQ G++VSVK+PVGKGCGF+QFA+R      I  +  T        L + R+    +R D G  W+G Y
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRN----YRADYGNHWSGAY

AT5G54900.1 RNA-binding protein 45A2.6e-1440.23Show/hide
Query:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIR--NYRADYGNHWSGAYY
        IF+GGLD NVT+D+LK +F Q G+++ VK+P GK CGF+Q+AN+    + ++++  T   G    L + R  N ++D      G YY
Subjt:  IFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIR--NYRADYGNHWSGAYY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTAAAGATATTCATTGGAGGGCTTGATCCAAATGTTACTAATGATGATCTTAAGCAGCTATTTTCTCAACATGGAGACATAGTATCTGTTAAATTACCAGTTGG
AAAAGGTTGTGGTTTTATCCAATTTGCAAACAGGTTAGGAGATACTTATGGAATAACGATTATTCCCCCCACCCCCACACAAGGATTCTACTCTTGCCTGGTTTATATAA
GAAATTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGAGGACAAATGTATGGCAAATATGGATACGCTCTGTCGTTACCTCATGATCCACCAACCATGT
ATGCAGCAGCAGGGCACCCATCAACAACAAGTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTAAAGATATTCATTGGAGGGCTTGATCCAAATGTTACTAATGATGATCTTAAGCAGCTATTTTCTCAACATGGAGACATAGTATCTGTTAAATTACCAGTTGG
AAAAGGTTGTGGTTTTATCCAATTTGCAAACAGGTTAGGAGATACTTATGGAATAACGATTATTCCCCCCACCCCCACACAAGGATTCTACTCTTGCCTGGTTTATATAA
GAAATTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGAGGACAAATGTATGGCAAATATGGATACGCTCTGTCGTTACCTCATGATCCACCAACCATGT
ATGCAGCAGCAGGGCACCCATCAACAACAAGTGAACTGA
Protein sequenceShow/hide protein sequence
MCVKIFIGGLDPNVTNDDLKQLFSQHGDIVSVKLPVGKGCGFIQFANRLGDTYGITIIPPTPTQGFYSCLVYIRNYRADYGNHWSGAYYEDKCMANMDTLCRYLMIHQPC
MQQQGTHQQQVN