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Clc08G16550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G16550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglutamate receptor 2.5-like
Genome locationClcChr08:27025831..27026491
RNA-Seq ExpressionClc08G16550
SyntenyClc08G16550
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015276 - ligand-gated ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598369.1 Glutamate receptor 2.5, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2367.65Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYV
        +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SSA  +
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYV

Query:  FI
         I
Subjt:  FI

XP_011650184.1 glutamate receptor 2.5 [Cucumis sativus]8.6e-2772.28Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS
        M+GNGFCC S FLGLV L+L LGSEAH ++KE   CQ+NL I   T RIGVV DSGSQIGKQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  S
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS

Query:  S
        S
Subjt:  S

XP_022962557.1 glutamate receptor 2.5-like [Cucurbita moschata]4.4e-2369.79Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS
        +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SS
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS

XP_022997541.1 glutamate receptor 2.5-like [Cucurbita maxima]1.2e-2372.63Show/hide
Query:  PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI
        P FLGL+LLLLL  SEAHT+KK    QKN T   TTRIGVV DSGSQIGKQQ VAMKMGL+ FHL+SS  KLELLLHDS+PNFTSP SSA  + I
Subjt:  PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI

XP_038884568.1 glutamate receptor 2.5-like [Benincasa hispida]1.4e-3281Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCV--KLELLLHD-SNPNFTSPHSSA
        MLGNGFCC S FLGLVLL LLLGSEAHTSKKE TCQK+     R+GV+ DSGSQIGKQQMVAMKMGL+DFHLASSCV  KLELLLHD S+PNFTSP SSA
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCV--KLELLLHD-SNPNFTSPHSSA

TrEMBL top hitse value%identityAlignment
A0A0A0LKV1 Uncharacterized protein3.2e-2771.57Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS
        M+GNGFCC S FLGLV L+L LGSEAH ++KE   CQ+NL I   T RIGVV DSGSQIGKQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  S
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS

Query:  SA
        S+
Subjt:  SA

A0A1S3BAP7 glutamate receptor 2.5-like6.2e-2369.9Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTR-IGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPH
        M+ NGF   S FLGLV L+L LGSEAHT++KE   CQKNL I   T R IG+V DSGSQIGKQQ+VA+KMGL+DF LA SSCVKLELLLHDS+PN TS  
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTR-IGVVLDSGSQIGKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPH

Query:  SSA
        SSA
Subjt:  SSA

A0A6J1HD04 glutamate receptor 2.5-like2.1e-2369.79Show/hide
Query:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS
        +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SS
Subjt:  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS

A0A6J1K353 glutamate receptor 2.5-like2.0e-2168.42Show/hide
Query:  FCCPSF-LGLVLLLLLLGSEAHTSKKETTCQKN---LTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSA
        FC  SF LGL+LL   LGSEA TSK    CQ N      TTRIGVV DSGSQ+GKQQ+VAMKMGL  FHL+SSC+KLELLLHDS+ N TSP SSA
Subjt:  FCCPSF-LGLVLLLLLLGSEAHTSKKETTCQKN---LTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSA

A0A6J1K7S1 glutamate receptor 2.5-like5.6e-2472.63Show/hide
Query:  PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI
        P FLGL+LLLLL  SEAHT+KK    QKN T   TTRIGVV DSGSQIGKQQ VAMKMGL+ FHL+SS  KLELLLHDS+PNFTSP SSA  + I
Subjt:  PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAACCACTTGTCAAAAAAA
CCTAACAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTT
CATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTTCTGCTTGTTATGTTTTCATAATCTTCATAATCCTCGTTTTCCATGGA
GCTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAACCACTTGTCAAAAAAA
CCTAACAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTT
CATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTTCTGCTTGTTATGTTTTCATAATCTTCATAATCCTCGTTTTCCATGGA
GCTATCTAA
Protein sequenceShow/hide protein sequence
MLGNGFCCPSFLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFIIFIILVFHG
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