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Clc08G16810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G16810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein GID2-like
Genome locationClcChr08:27227707..27228767
RNA-Seq ExpressionClc08G16810
SyntenyClc08G16810
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR045118 - F-box only protein FBXO9/FBXO48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5982.52Show/hide
Query:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        KKIK +       E Q  PPPS+  FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSL
Subjt:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        YPFPP+IG   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_004143017.1 F-box protein GID2 [Cucumis sativus]7.6e-6588.73Show/hide
Query:  MKKKIKIIISDSHEQE-TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        M  +IK   S S++QE   SQP PSTFANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MKKKIKIIISDSHEQE-TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGC+ PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]1.8e-6689.51Show/hide
Query:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        M  KIK   SDS++QE   +SQP PSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGC+ PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]1.1e-5881.82Show/hide
Query:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        KKIK +       E Q  PPPS+  FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSL
Subjt:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        YPFPP++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]5.7e-6084.62Show/hide
Query:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        KKIK     S  QE QS PP S+  FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSL
Subjt:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        YPFPP+IG   C PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hitse value%identityAlignment
A0A0A0LR75 F-box domain-containing protein3.7e-6588.73Show/hide
Query:  MKKKIKIIISDSHEQE-TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
        M  +IK   S S++QE   SQP PSTFANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS
Subjt:  MKKKIKIIISDSHEQE-TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHS

Query:  LYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPFPPMIGC+ PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like8.8e-6789.51Show/hide
Query:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        M  KIK   SDS++QE   +SQP PSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGC+ PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like8.8e-6789.51Show/hide
Query:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
        M  KIK   SDS++QE   +SQP PSTFANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKIIISDSHEQE--TQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLH

Query:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPFPPMIGC+ PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFPPMIGCS-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like5.2e-5981.82Show/hide
Query:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL
        KKIK +       E Q  PPPS+  FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSL
Subjt:  KKIKIIISDSHEQETQSQPPPST--FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSL

Query:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        YPFPP++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  YPFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like1.3e-5782.39Show/hide
Query:  KKIKIIISDSHEQETQSQPPPST-FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY
        KKIK     S  QE QS PP S+ FANLDDNLLFEVFKHVDARTLATA+GVSKQW+KTAHDE LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLY
Subjt:  KKIKIIISDSHEQETQSQPPPST-FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY

Query:  PFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        PFPP+IG   C  WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PFPPMIG---CSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hitse value%identityAlignment
Q7XAK4 F-box protein GID25.8e-2341.55Show/hide
Query:  EQETQSQPPPST-------FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFP--
        +Q+ + QPP            +L ++L+FEV +  +ARTLA AA VS+ W + A DERLWE  C + W NLG + +QLR+VVL+LGGFRRLH++Y  P  
Subjt:  EQETQSQPPPST-------FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFP--

Query:  --------------PMIGCSPWGKDEVHLSLSLLSIRYYEKM
                      P +     G+D+V LSLSL SI +++ M
Subjt:  --------------PMIGCSPWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE3.9e-1130.6Show/hide
Query:  KKKIKIIISDSHEQETQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY
        +K++ ++   +++++  +Q P  +  N   ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L 
Subjt:  KKKIKIIISDSHEQETQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY

Query:  PFPPMIGCSP---WGKDEVHLSLSLLSIRYYEKM
           P++   P   W +D++ LSLSL  + YYE++
Subjt:  PFPPMIGCSP---WGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID21.2e-3968.1Show/hide
Query:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCSP---WGKDEVHLSLS
        F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   +P   +GKDE+ L+LS
Subjt:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCSP---WGKDEVHLSLS

Query:  LLSIRYYEKMKFKNRP
        LLSIRYYEKM F  RP
Subjt:  LLSIRYYEKMKFKNRP

Arabidopsis top hitse value%identityAlignment
AT4G24210.1 F-box family protein8.2e-4168.1Show/hide
Query:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCSP---WGKDEVHLSLS
        F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   +P   +GKDE+ L+LS
Subjt:  FANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCSP---WGKDEVHLSLS

Query:  LLSIRYYEKMKFKNRP
        LLSIRYYEKM F  RP
Subjt:  LLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein2.7e-1230.6Show/hide
Query:  KKKIKIIISDSHEQETQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY
        +K++ ++   +++++  +Q P  +  N   ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L 
Subjt:  KKKIKIIISDSHEQETQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLY

Query:  PFPPMIGCSP---WGKDEVHLSLSLLSIRYYEKM
           P++   P   W +D++ LSLSL  + YYE++
Subjt:  PFPPMIGCSP---WGKDEVHLSLSLLSIRYYEKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAAATCAAGATAATTATATCAGATTCACACGAACAAGAAACACAGTCCCAACCACCACCCTCTACGTTTGCAAATTTAGACGACAATCTGTTGTTC
GAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCCACGGCGGCCGGAGTCAGCAAGCAGTGGTTCAAAACCGCCCACGACGAGCGCCTCTGGGAGCTGCTCTGC
ACCAAACACTGGACCAACCTCGGCTGTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTACACTCTCTTTACCCATTTCCCCCT
ATGATTGGATGTAGTCCATGGGGCAAAGACGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATCCGCTACTACGAGAAGATGAAATTCAAAAACAGACCCACATCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATTGAATTGGCAGTTTTGTCGTCTTCCAAGCTTTTTCAGACAATTTGCATCACTTTACCAACTTCTCCCAACCCCATTCCTCTTTCTTCATTTCCTCTTTTCTCA
TCAATTTTCATCTCCAATCTTCAAACTAAACCGAATTCCCAATGAAGAAGAAAATCAAGATAATTATATCAGATTCACACGAACAAGAAACACAGTCCCAACCAC
CACCCTCTACGTTTGCAAATTTAGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCCACGGCGGCCGGAGTCAGCAAGCAGTGGT
TCAAAACCGCCCACGACGAGCGCCTCTGGGAGCTGCTCTGCACCAAACACTGGACCAACCTCGGCTGTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTG
GTGGCTTCCGTCGATTACACTCTCTTTACCCATTTCCCCCTATGATTGGATGTAGTCCATGGGGCAAAGACGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATCC
GCTACTACGAGAAGATGAAATTCAAAAACAGACCCACATCTTGAAATCTCAATCTCTTTTATGTAAAAGTTAAATCAATCACACGAATTGGCGGAGGTTCTGTTG
AAATTGAAATTCCTTTTTCTTCCACTGTATCGGATGGATCGTTTAAATTTGGTTGTTCTGAGTTAACTAGCTTACAGATTTTTCTTCTGTCAATTGACTCTGGGT
GGATTAGCTTGCAATTTTATATTATGTGGTATTTGCTGCTTGTCTATGCCAACTGTTACCTGAAGATGATGTTGAAGAGGGATTTCGGTATTGACTCAAAACTTC
CATTTAATAATGAAAGTAAAGATTATGGTTCAGTCTGTCGACAGCTCGGTAACGTAAAAATTAGATTTGGCGTTGAAGTTTCTAATGGCGACAACTTCCTTTCCC
ACTTGGTTCTGTATCAAAATAGTTCATCGTTTTGTGTCAAATCAATCATGGGTGTTAAATTAATTTCATCCATTCGATTCACAGAGATGAATAGAACTTTGCTGC
TTCATGGTCTA
Protein sequenceShow/hide protein sequence
MKKKIKIIISDSHEQETQSQPPPSTFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPP
MIGCSPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS