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Clc08G16910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G16910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSnakin-1
Genome locationClcChr08:27289680..27292369
RNA-Seq ExpressionClc08G16910
SyntenyClc08G16910
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598348.1 putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia]3.3e-0568.42Show/hide
Query:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Subjt:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
XP_004142881.1 peamaclein [Cucumis sativus]1.5e-0583.33Show/hide
Query:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        RRRC+KAGV+DRCMKYCGICCEKCG V +G
Subjt:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
XP_022961995.1 peamaclein-like [Cucurbita moschata]3.3e-0568.42Show/hide
Query:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Subjt:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
XP_023546651.1 peamaclein [Cucurbita pepo subsp. pepo]5.6e-0568.42Show/hide
Query:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Subjt:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
XP_038885998.1 peamaclein-like [Benincasa hispida]1.9e-0568.42Show/hide
Query:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        PG      ++RCAKAGVQDRCMKYCGICC KCG V +G
Subjt:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
TrEMBL top hitse value%identityAlignment
A0A0A0LKN7 Uncharacterized protein7.1e-0683.33Show/hide
Query:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        RRRC+KAGV+DRCMKYCGICCEKCG V +G
Subjt:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
A0A1S3BAP8 peamaclein-like4.6e-0580Show/hide
Query:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        RRRC+KAGV+DRCMKYCGICC KCG V +G
Subjt:  RRRCAKAGVQDRCMKYCGICCEKCGDVSTG
A0A6J1HDT0 peamaclein-like1.6e-0568.42Show/hide
Query:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Subjt:  PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
A0A6J1K7T2 peamaclein-like1.3e-0482.14Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
        RCAKAGVQ+RC+KYCGICCEKCG V +G
Subjt:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
W9RJM0 Uncharacterized protein1.0e-0454Show/hide
Query:  SSSYLPSRSHFLPGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
        SS + PS ++F  G        RC+KAGV DRCMKYCGICCE+C  V +G
Subjt:  SSSYLPSRSHFLPGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG
SwissProt top hitse value%identityAlignment
C0HLQ0 Cypmaclein5.8e-0564.52Show/hide
Query:  RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA
        RRC+KA   DRC+KYCGICC+KC  V  G A
Subjt:  RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA
C0HLQ1 Cypmaclein2.6e-0568.97Show/hide
Query:  RRCAKAGVQDRCMKYCGICCEKCGDVSTG
        RRC+KA   DRC+KYCGICCEKC  V  G
Subjt:  RRCAKAGVQDRCMKYCGICCEKCGDVSTG
C0HLQ2 Cypmaclein2.0e-0567.74Show/hide
Query:  RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA
        RRC+KA   DRC+KYCGICCEKC  V  G A
Subjt:  RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA
P86888 Peamaclein2.0e-0571.43Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
        RC+KAG Q+RC+KYCGICCEKC  V +G
Subjt:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
Q948Z4 Snakin-15.8e-0567.86Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
        RC+KAG+ DRC+KYCGICCE+C  V +G
Subjt:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
Arabidopsis top hitse value%identityAlignment
AT2G14900.1 Gibberellin-regulated family protein5.9e-0560.71Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
        RC +AG++DRC+KYCGICC+ C  V +G
Subjt:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
AT2G39540.1 Gibberellin-regulated family protein1.7e-0457.14Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
        RC+KAG  + C+KYC ICC+KC  V +G
Subjt:  RCAKAGVQDRCMKYCGICCEKCGDVSTG
AT5G59845.1 Gibberellin-regulated family protein1.6e-0581.82Show/hide
Query:  RCAKAGVQDRCMKYCGICCEKC
        RC+KAG QDRC+KYC ICCEKC
Subjt:  RCAKAGVQDRCMKYCGICCEKC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCCCCTTAGAAGTGGAAAGTGAAGGCGACGGTGCAATGAGAGGAAGCCACGTAGACATCCGCAATAACAAAAACCCCAACGATAAAAAGGTGACGAAGCATGA
TTGTTCCCAAGAAAATGAAGTTCCTTCATCTTCTTACTTGCCTTCTCGTTCTCACTTCCTTCCTGGAGCTGTCCTTAGGTGCCTCAGAAGGAGGTGTGCAAAAGCTGGGG
TGCAGGATCGGTGCATGAAGTATTGTGGGATATGTTGCGAGAAATGCGGAGATGTGTCCACTGGTAAGGCATCAAAGTGTGGGCAAAAGACGGAGCAAAACGGGACGTGG
CCTACAGTTTGCCCACAATGGTTTGGCTCTGGGCATTGTGAGGCCACCGCCTTCACTCATATCCACCATCTCCTTCCCCACTCTCCGCCACTCAAAGCACTGAATCAAAC
ACCCCAAAGTCAGCCCCACCATCCGCATCGCCAATCCCTCACCGGGACAGCCCCTCCGCCCCGCCCCAAACGGCAGCCAACGACACCCCTCCTCCACTTCCCCTGTAGCC
TGGAACCGCTCCGGCCTAAACTCTGCTGGGTCCGGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCCCCTTAGAAGTGGAAAGTGAAGGCGACGGTGCAATGAGAGGAAGCCACGTAGACATCCGCAATAACAAAAACCCCAACGATAAAAAGGTGACGAAGCATGA
TTGTTCCCAAGAAAATGAAGTTCCTTCATCTTCTTACTTGCCTTCTCGTTCTCACTTCCTTCCTGGAGCTGTCCTTAGGTGCCTCAGAAGGAGGTGTGCAAAAGCTGGGG
TGCAGGATCGGTGCATGAAGTATTGTGGGATATGTTGCGAGAAATGCGGAGATGTGTCCACTGGTAAGGCATCAAAGTGTGGGCAAAAGACGGAGCAAAACGGGACGTGG
CCTACAGTTTGCCCACAATGGTTTGGCTCTGGGCATTGTGAGGCCACCGCCTTCACTCATATCCACCATCTCCTTCCCCACTCTCCGCCACTCAAAGCACTGAATCAAAC
ACCCCAAAGTCAGCCCCACCATCCGCATCGCCAATCCCTCACCGGGACAGCCCCTCCGCCCCGCCCCAAACGGCAGCCAACGACACCCCTCCTCCACTTCCCCTGTAGCC
TGGAACCGCTCCGGCCTAAACTCTGCTGGGTCCGGCCATGA
Protein sequenceShow/hide protein sequence
MAFPLEVESEGDGAMRGSHVDIRNNKNPNDKKVTKHDCSQENEVPSSSYLPSRSHFLPGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTGKASKCGQKTEQNGTW
PTVCPQWFGSGHCEATAFTHIHHLLPHSPPLKALNQTPQSQPHHPHRQSLTGTAPPPRPKRQPTTPLLHFPCSLEPLRPKLCWVRP