CuGenDBv2

Gene ID	Clc08G18120
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	ClcChr08:28246551..28248926
RNA-Seq Expression	Clc08G18120
Synteny	Clc08G18120
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029231.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.9e-94

94.55

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINST+NHNTPK IPKPIS+ SLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

3.5e-95

96.04

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

3.6e-100

95.79

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Query:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE
        ELSST TSKSTSMAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAE
Subjt:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE

Query:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
        IAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
Subjt:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLNRMRSE
Subjt:  LQPALNQLNRMRSE

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

6.2e-100

95.33

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Query:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE
        ELSSTETSKSTSMAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAE
Subjt:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE

Query:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
        IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
Subjt:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLNRMRS+
Subjt:  LQPALNQLNRMRSE

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.2e-103

96.33

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Query:  QLHQELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQ
        Q   ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPIS+ SLQNLPKGL+SSKSNQNSNLST LSSTAIAGAVFSTLSSSDPAFAAQ
Subjt:  QLHQELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQ

Query:  QIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV
        QIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV
Subjt:  QIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV

Query:  LYNILQPALNQLNRMRSE
        LYNILQPALNQLNRMRSE
Subjt:  LYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

1.8e-100

95.79

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Query:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE
        ELSST TSKSTSMAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAE
Subjt:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE

Query:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
        IAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
Subjt:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLNRMRSE
Subjt:  LQPALNQLNRMRSE

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

3.0e-100

95.33

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Query:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE
        ELSSTETSKSTSMAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAE
Subjt:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE

Query:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
        IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
Subjt:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLNRMRS+
Subjt:  LQPALNQLNRMRSE

A0A5A7UYJ2 Photosystem II core complex proteins psbY

3.0e-100

95.33

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Query:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE
        ELSSTETSKSTSMAATMATMAVLSVKCTSINSTK HNT K IPKPIS+ SLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAE
Subjt:  ELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAE

Query:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
        IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI
Subjt:  IAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLNRMRS+
Subjt:  LQPALNQLNRMRSE

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

6.3e-90

90.59

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINS+KNH TPKPI  PIS+ SLQNLPK LISSK++QN NLSTFLSSTAIAGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

F6GVJ9 Uncharacterized protein

3.6e-77

80.2

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAAT+ATMA+L+ KC SINS KN N  KP  KPIS+ S+QNLPKGL + KS++N NLST L+ TAIAGA+FSTLSS DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLP+IPAIAWVLFNILQPALNQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASEIA +ADA+SSD+RGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.2e-45

56.59

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N       P P PK       Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

2.3e-49

59.81

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Query:  MAATMA-TMAVLSVKCTSINSTKNHNT-PKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN
        MAATMA TMAVL+ KC ++N+ K  +T PKP  KPIS+      P GL +SK      LS  +++ AIAGAVF+TL S DPAFA QQ+A+IAA+    DN
Subjt:  MAATMA-TMAVLSVKCTSINSTKNHNT-PKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN

Query:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL
        RGLALLLP+IPA+ WVLFNILQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LLL VV PAI WVL+NILQPAL
Subjt:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL

Query:  NQLNRMRSE
        NQLN+MRS+
Subjt:  NQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

8.5e-47

56.59

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Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N       P P PK       Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

Sequences

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CDS sequence

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ATGGGATGGAGGATTTTAGCGATGAAAGCTGAAGATTTTCCAGTGGGGCTCATAAAATTGGGTGCTTTTGTTGCTTCTTTGGTGAAAAATTCAAGCAACAGAAGAAAGCT
TGGATTAGGAAAACGTGGAGGACTGCCACAACTCCATCAAGAGCTTAGTTCAACAGAAACAAGCAAGTCAACTTCTATGGCAGCTACTATGGCTACAATGGCAGTGCTCA
GTGTCAAGTGCACAAGCATCAACTCCACCAAAAACCACAACACCCCAAAGCCAATCCCCAAACCCATCTCCATCTTCTCTCTCCAAAACCTTCCCAAAGGACTAATCTCA
TCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTATCCAGCACCGCCATCGCTGGAGCTGTCTTCTCAACCTTAAGCTCATCAGATCCTGCCTTTGCAGCCCAACA
AATTGCAGAGATTGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTTTGCTACCTCTTATTCCAGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACC
AGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATCGCC
ATGATTGCTGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCACCAGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCA
GCTCAACAGGATGAGGTCCGAATGA

mRNA sequence

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Protein sequence

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MGWRILAMKAEDFPVGLIKLGAFVASLVKNSSNRRKLGLGKRGGLPQLHQELSSTETSKSTSMAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISIFSLQNLPKGLIS
SKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIA
MIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Clc08G18120 (gene) of Watermelon (cordophanus) v2 genome