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Clc08G18540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G18540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPlant protein 1589 of unknown function
Genome locationClcChr08:28493921..28495197
RNA-Seq ExpressionClc08G18540
SyntenyClc08G18540
Gene Ontology termsNA
InterPro domainsIPR006476 - Conserved hypothetical protein CHP01589, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143067.2 uncharacterized protein LOC101211262 [Cucumis sativus]1.5e-2575.86Show/hide
Query:  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        M  P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALA HANIRPLITLTVWKELQKENS+FFRAYFHTISPNPFL
Subjt:  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

XP_008444348.1 PREDICTED: uncharacterized protein LOC103487701 [Cucumis melo]1.4e-2679.22Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL
        VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENS+FFRAYFHTISPNPFL     +   I+ +  L
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL

XP_022961647.1 uncharacterized protein LOC111462356 isoform X1 [Cucurbita moschata]2.0e-2573.03Show/hide
Query:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPS
        P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVWKELQKEN EFFRAYF TIS +PFL +IPS
Subjt:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPS

XP_038884418.1 uncharacterized protein LOC120075271 isoform X1 [Benincasa hispida]6.1e-2798.36Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

XP_038884419.1 uncharacterized protein LOC120075271 isoform X2 [Benincasa hispida]6.1e-2798.36Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

TrEMBL top hitse value%identityAlignment
A0A0A0LMP2 Uncharacterized protein7.3e-2675.86Show/hide
Query:  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        M  P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALA HANIRPLITLTVWKELQKENS+FFRAYFHTISPNPFL
Subjt:  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

A0A1S3BA39 uncharacterized protein LOC1034877016.6e-2779.22Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL
        VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENS+FFRAYFHTISPNPFL     +   I+ +  L
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL

A0A6J1HAR0 uncharacterized protein LOC111462356 isoform X19.6e-2673.03Show/hide
Query:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPS
        P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVWKELQKEN EFFRAYF TIS +PFL +IPS
Subjt:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPS

A0A6J1K802 uncharacterized protein LOC111492501 isoform X28.9e-2465Show/hide
Query:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL
        P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVWKELQKEN EFFRAYF TIS +PFL    + FT+  +  I+
Subjt:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL

A0A6J1KA89 uncharacterized protein LOC111492501 isoform X11.4e-2466.33Show/hide
Query:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGII-----PSNFTK
        P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVWKELQKEN EFFRAYF TIS +PFL +      P N++K
Subjt:  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGII-----PSNFTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10657.1 Plant protein 1589 of unknown function6.1e-1748.24Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLT------------------------VWKELQKENSEFFRAYFHTISPNPFL
        VQH+IERC+L  M+RDECVKAL HHA+I PL+TLT                        VW+ LQ+EN +FF  Y H +SP PFL
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLT------------------------VWKELQKENSEFFRAYFHTISPNPFL

AT1G10657.2 Plant protein 1589 of unknown function5.4e-2167.21Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF  Y H +SP PFL
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

AT1G10657.3 Plant protein 1589 of unknown function5.4e-2167.21Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL
        VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF  Y H +SP PFL
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFL

AT1G10657.4 Plant protein 1589 of unknown function4.0e-1670.83Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFF
        VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFF

AT3G55240.1 Plant protein 1589 of unknown function1.1e-1872.55Show/hide
Query:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAY
        VQH+IE+CL+FHMS++ECV+AL+ HANI P+IT TVWKEL+KEN EFF+AY
Subjt:  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCACCAGTTTCTTCCTTGTTTTTATTGCCATCCCCATGCCTATATCCGGATGGTACTGCTAACGTCCAACATCTGATAGAGAGATGCTTGCTGTTTCATATGAG
TCGAGATGAGTGCGTAAAGGCATTGGCTCACCATGCAAACATTCGCCCTCTCATAACACTTACAGTGTGGAAAGAGCTCCAGAAAGAGAACTCTGAATTCTTCCGGGCAT
ATTTCCATACTATTTCTCCCAACCCATTCCTCGGTATCATCCCTTCTAATTTCACTAAAATAATTATTCAATCAATTCTTGGATGTTTATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCACCAGTTTCTTCCTTGTTTTTATTGCCATCCCCATGCCTATATCCGGATGGTACTGCTAACGTCCAACATCTGATAGAGAGATGCTTGCTGTTTCATATGAG
TCGAGATGAGTGCGTAAAGGCATTGGCTCACCATGCAAACATTCGCCCTCTCATAACACTTACAGTGTGGAAAGAGCTCCAGAAAGAGAACTCTGAATTCTTCCGGGCAT
ATTTCCATACTATTTCTCCCAACCCATTCCTCGGTATCATCCCTTCTAATTTCACTAAAATAATTATTCAATCAATTCTTGGATGTTTATTCTAA
Protein sequenceShow/hide protein sequence
MVPPVSSLFLLPSPCLYPDGTANVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSILGCLF