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Clc08G18680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G18680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontype 2 DNA topoisomerase 6 subunit B-like isoform X4
Genome locationClcChr08:28584455..28586619
RNA-Seq ExpressionClc08G18680
SyntenyClc08G18680
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR034566 - Type 2 DNA topoisomerase 6 subunit B-like, plants


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061086.1 type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucumis melo var. makuwa]7.5e-5476.98Show/hide
Query:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN
        ATPLVQ+T+ DKKL+ K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAI GL+ YSNDMDFK+ECLAILGLQPHQSEGE+VEETIK KIIS IE N
Subjt:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN

Query:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        DQRPQGIKEVA LLF  GR+KLQ +++ECY   FDPMDL
Subjt:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

KAG7029197.1 Type 2 DNA topoisomerase 6 subunit B-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-5477.86Show/hide
Query:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV
        EA PL+Q+T+FDKKL+RK ++LALDDFKNK+AG LLSADTLKIS+FAPD+AK+I GL+ YS+DMDFK+ECLAILGLQPHQSEGEIV E IK KIISAIEV
Subjt:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV

Query:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        ND+R QG KEVAPLLFE GR +LQFV+DEC + GFDPMDL
Subjt:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

XP_038885430.1 type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida]6.7e-5577.86Show/hide
Query:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV
        EATP+VQ+T++DKKL+RK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+ GL+ YSNDMDFK ECL+ILGLQ HQSEG IVEETIK  IISAIE 
Subjt:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV

Query:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        ND+RPQ +KEVAPLLFEDGR    FV+DECYK GFDPMDL
Subjt:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

XP_038885431.1 type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida]6.7e-5577.86Show/hide
Query:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV
        EATP+VQ+T++DKKL+RK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+ GL+ YSNDMDFK ECL+ILGLQ HQSEG IVEETIK  IISAIE 
Subjt:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV

Query:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        ND+RPQ +KEVAPLLFEDGR    FV+DECYK GFDPMDL
Subjt:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

XP_038885432.1 type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida]6.7e-5577.86Show/hide
Query:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV
        EATP+VQ+T++DKKL+RK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+ GL+ YSNDMDFK ECL+ILGLQ HQSEG IVEETIK  IISAIE 
Subjt:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV

Query:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        ND+RPQ +KEVAPLLFEDGR    FV+DECYK GFDPMDL
Subjt:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

TrEMBL top hitse value%identityAlignment
A0A1S3BAV4 type 2 DNA topoisomerase 6 subunit B-like isoform X13.6e-5476.98Show/hide
Query:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN
        ATPLVQ+T+ DKKL+ K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAI GL+ YSNDMDFK+ECLAILGLQPHQSEGE+VEETIK KIIS IE N
Subjt:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN

Query:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        DQRPQGIKEVA LLF  GR+KLQ +++ECY   FDPMDL
Subjt:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

A0A1S4DVL3 type 2 DNA topoisomerase 6 subunit B-like isoform X23.6e-5476.98Show/hide
Query:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN
        ATPLVQ+T+ DKKL+ K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAI GL+ YSNDMDFK+ECLAILGLQPHQSEGE+VEETIK KIIS IE N
Subjt:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN

Query:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        DQRPQGIKEVA LLF  GR+KLQ +++ECY   FDPMDL
Subjt:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

A0A1S4DVN5 type 2 DNA topoisomerase 6 subunit B-like isoform X43.6e-5476.98Show/hide
Query:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN
        ATPLVQ+T+ DKKL+ K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAI GL+ YSNDMDFK+ECLAILGLQPHQSEGE+VEETIK KIIS IE N
Subjt:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN

Query:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        DQRPQGIKEVA LLF  GR+KLQ +++ECY   FDPMDL
Subjt:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

A0A5A7V3J3 Type 2 DNA topoisomerase 6 subunit B-like isoform X43.6e-5476.98Show/hide
Query:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN
        ATPLVQ+T+ DKKL+ K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAI GL+ YSNDMDFK+ECLAILGLQPHQSEGE+VEETIK KIIS IE N
Subjt:  ATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVN

Query:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        DQRPQGIKEVA LLF  GR+KLQ +++ECY   FDPMDL
Subjt:  DQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

A0A6J1K810 type 2 DNA topoisomerase 6 subunit B-like isoform X53.6e-5477.86Show/hide
Query:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV
        EA PL+Q+T+FDKKL+RK ++LALDDFKNK+AG LLSADTLKIS+FAPD+AK+I GL+ YS+DMDFK+ECLAILGLQPHQSEGEIV E IKNKIISAIEV
Subjt:  EATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEV

Query:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL
        ND+R QG KEVAPLLFE GR +LQFV+DEC + G DPMDL
Subjt:  NDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL

SwissProt top hitse value%identityAlignment
Q5Q0E6 Type 2 DNA topoisomerase 6 subunit B-like9.2e-2342.98Show/hide
Query:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL
        L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++I GLI  S D+DF+ +CL++LG Q  + E + VE  I+ KI++ I +N+++PQ  +E AP 
Subjt:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL

Query:  LFEDGRRKLQFVNDECYKGGF
        LF DG  +  F  DE  +G +
Subjt:  LFEDGRRKLQFVNDECYKGGF

Arabidopsis top hitse value%identityAlignment
AT1G60460.1 unknown protein2.5e-2344.35Show/hide
Query:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL
        L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++I GLI  S D+DF+ +CL++LG Q  + E + VE  I+ KI++ I +N+++PQ  +E AP 
Subjt:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL

Query:  LFEDGRRKLQFVNDE
        LF DG  +  F  DE
Subjt:  LFEDGRRKLQFVNDE

AT1G60460.2 unknown protein6.6e-2442.98Show/hide
Query:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL
        L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++I GLI  S D+DF+ +CL++LG Q  + E + VE  I+ KI++ I +N+++PQ  +E AP 
Subjt:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL

Query:  LFEDGRRKLQFVNDECYKGGF
        LF DG  +  F  DE  +G +
Subjt:  LFEDGRRKLQFVNDECYKGGF

AT1G60460.3 unknown protein6.6e-2442.98Show/hide
Query:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL
        L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++I GLI  S D+DF+ +CL++LG Q  + E + VE  I+ KI++ I +N+++PQ  +E AP 
Subjt:  LVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPL

Query:  LFEDGRRKLQFVNDECYKGGF
        LF DG  +  F  DE  +G +
Subjt:  LFEDGRRKLQFVNDECYKGGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATAATTCTAGAAGGGGAGGGGAAGGATTTCGTCACCGGTGAGGAGTATGCATTTGCGATCAGCAAGTCAAAGTCAACAGATGCAACGTTAGAAGCCACACCATT
GGTGCAGCGGACTCAGTTTGATAAAAAACTCGTAAGAAAAGTAATCGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCA
AGATCAGTAGGTTTGCCCCTGATATTGCTAAAGCGATCCCCGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAGCCT
CACCAATCAGAAGGGGAAATAGTTGAAGAAACTATAAAGAATAAGATAATTTCAGCAATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCT
GTTTGAAGATGGTCGCCGCAAATTACAGTTTGTGAATGATGAATGTTACAAAGGTGGTTTTGATCCAATGGATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATATAATTCTAGAAGGGGAGGGGAAGGATTTCGTCACCGGTGAGGAGTATGCATTTGCGATCAGCAAGTCAAAGTCAACAGATGCAACGTTAGAAGCCACACCATT
GGTGCAGCGGACTCAGTTTGATAAAAAACTCGTAAGAAAAGTAATCGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCA
AGATCAGTAGGTTTGCCCCTGATATTGCTAAAGCGATCCCCGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAGCCT
CACCAATCAGAAGGGGAAATAGTTGAAGAAACTATAAAGAATAAGATAATTTCAGCAATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCT
GTTTGAAGATGGTCGCCGCAAATTACAGTTTGTGAATGATGAATGTTACAAAGGTGGTTTTGATCCAATGGATTTGTAAGTATAATCTTCGTATTGAATAAAAGTGAAAC
TGAT
Protein sequenceShow/hide protein sequence
MNIILEGEGKDFVTGEEYAFAISKSKSTDATLEATPLVQRTQFDKKLVRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIPGLISYSNDMDFKKECLAILGLQP
HQSEGEIVEETIKNKIISAIEVNDQRPQGIKEVAPLLFEDGRRKLQFVNDECYKGGFDPMDL