CuGenDBv2

Gene ID	Clc08G18700
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Nucleic acid-binding, OB-fold-like protein
Genome location	ClcChr08:28589592..28597469
RNA-Seq Expression	Clc08G18700
Synteny	Clc08G18700
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7029193.1 hypothetical protein SDJN02_07530 [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-31

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEG TITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

XP_004142984.1 uncharacterized protein At4g28440 [Cucumis sativus]

4.5e-32

76.92

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

XP_022961781.1 uncharacterized protein At4g28440-like [Cucurbita moschata]

1.0e-31

75.96

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

XP_022996548.1 uncharacterized protein At4g28440-like [Cucurbita maxima]

1.0e-31

75.96

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

XP_038883981.1 uncharacterized protein At4g28440 [Benincasa hispida]

2.7e-32

76.92

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNA1 Uncharacterized protein

2.2e-32

76.92

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

A0A1S3BA24 uncharacterized protein At4g28440 isoform X1

2.2e-32

76.92

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

A0A5A7V0K6 Nucleic acid-binding protein

2.2e-32

76.92

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

A0A6J1HBA7 uncharacterized protein At4g28440-like

4.9e-32

75.96

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

A0A6J1KB77 uncharacterized protein At4g28440-like

4.9e-32

75.96

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY
        VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR   V V     F ++ D+ +    Y
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIV---FIFLLQPDHKIKQSSY

Query:  KITS
        ++ +
Subjt:  KITS

SwissProt top hits

e value

%identity

Alignment

O49453 Uncharacterized protein At4g28440

1.1e-17

48.15

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Query:  VKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVD---RVNFVIVFIFLLQPDHK
        VKV+   +V+   +K RP    +R     RI ECL+GDETG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL VD   R+       F ++ D+ 
Subjt:  VKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVD---RVNFVIVFIFLLQPDHK

Query:  IKQSSYKI
        +    Y++
Subjt:  IKQSSYKI

Arabidopsis top hits

e value

%identity

Alignment

AT1G10590.1 Nucleic acid-binding, OB-fold-like protein

2.0e-30

84.42

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Query:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR
        VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDR
Subjt:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein

2.0e-30

84.42

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Query:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR
        VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDR
Subjt:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein

2.0e-30

84.42

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Query:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR
        VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSMRLAVDR
Subjt:  VKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein

1.1e-31

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Query:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR
        VK+V+TKMVLQKGR DGPQARQ+RI+EC+VGDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+
Subjt:  VKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein

1.5e-20

68.42

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Query:  VKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR
        VKVV+   V QK G       R  RI+ECLVGDET  I+FTARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+
Subjt:  VKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDR

Sequences

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CDS sequence

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ATGAGAACAAGAATTGAGAATATAGTCCAGTCGCACATGTTCAGGGTCAATTGGATTGCACGTTCAAAATCATTCAAGCTTGACTTGAATGATCTTGCTTGGGAAGTGAT
TCGAAGATCAAGGTTCGATGAGGGCTGCAAGCTTCATCTGATCCGTGGTTTTATTGATCATCTTAGGAAGACACGTGGTCGATCACGATTAAAGTCTTCTGGCGATCAAT
CATCGACGGTTGTTATTGCAAAGCAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCCTTTTCCCCTTCGTCTTTGCCT
CTGCCACTCGTAAAAGGTATTAGTATCCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGTCAAGGTTGTGAATACGAAGATGGTATTGCA
GAAGGGTCGTCCTGATGGCCCTCAAGCTCGTCAGATGCGAATTGCTGAATGCCTAGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGTGGATT
TGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAGAGTGAATTTTGTGATCGTATTCATTTTC
CTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATCACAAGTTTCCGTTGGGGTACTGAAAATGCTCGCAAAAGTTCATTATTAGGGAATAGAATTCTGGA
GGCCAGTAGTACGAAAGTTGATTTTCATCCCTGCAGCCTATTGGTGGAACCGTTGTTGGGATCTACAAACAGAACAACTGCCACTAATGCCATGCCGAGAGTTCCCAGAA
AAGAGATAGGAAAGCAGTGGAATCTTTCACTTTCATCCGTAAAAAGCATCATAAGAAGTAAAATCCACAAGAGAATCCGTGAGGGGAAAGAGTCGGGTGTTTTGAAAAGG
TTAATACCAAGCCCTGATTGGCTTATTCTGATCCCCTTCCACGAATCTCACGGCTGTGGAGCAAATTACTTGTGTGCCATGCTTTATCCATTCAAAATGAAAGCAGAGGC
CGTACATCCATGA

mRNA sequence

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TTAAGATGTATTTTTAGATGAATCATCTAGTTTCTCCCTACAATCTCTTACTTCTCGTTCTTATTCTACGCCACATGCACGATATAAAAATGAATTTCAAACGCTTTTTC
CTATTAATTTTCTAAACGTCGCCCTCTCGTTTTTCTTGCTTCCCCTTGAATTCTCTCTCTAGTTCTTCTTGTTTCCCCCGAATTTTCTCTCATTTCTTCGTCGAGTGAAA
CGACTGCCACCAAGCTAACCATTTAAAAATGCATCTTAAGAGGTTTGATGTGGCACGTGAACGAGAAGCGAGACGTAGTTGTGAGACATGAGAACAAGAATTGAGAATAT
AGTCCAGTCGCACATGTTCAGGGTCAATTGGATTGCACGTTCAAAATCATTCAAGCTTGACTTGAATGATCTTGCTTGGGAAGTGATTCGAAGATCAAGGTTCGATGAGG
GCTGCAAGCTTCATCTGATCCGTGGTTTTATTGATCATCTTAGGAAGACACGTGGTCGATCACGATTAAAGTCTTCTGGCGATCAATCATCGACGGTTGTTATTGCAAAG
CAACTTTATTTCTTTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCCTTTTCCCCTTCGTCTTTGCCTCTGCCACTCGTAAAAGGTATTAG
TATCCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGTCAAGGTTGTGAATACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGCCCTC
AAGCTCGTCAGATGCGAATTGCTGAATGCCTAGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGTGGATTTGATGAAAGAAGGTGCTACTATA
ACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAGAGTGAATTTTGTGATCGTATTCATTTTCCTGCTGCAACCTGACCATAAAAT
AAAACAATCAAGCTACAAAATCACAAGTTTCCGTTGGGGTACTGAAAATGCTCGCAAAAGTTCATTATTAGGGAATAGAATTCTGGAGGCCAGTAGTACGAAAGTTGATT
TTCATCCCTGCAGCCTATTGGTGGAACCGTTGTTGGGATCTACAAACAGAACAACTGCCACTAATGCCATGCCGAGAGTTCCCAGAAAAGAGATAGGAAAGCAGTGGAAT
CTTTCACTTTCATCCGTAAAAAGCATCATAAGAAGTAAAATCCACAAGAGAATCCGTGAGGGGAAAGAGTCGGGTGTTTTGAAAAGGTTAATACCAAGCCCTGATTGGCT
TATTCTGATCCCCTTCCACGAATCTCACGGCTGTGGAGCAAATTACTTGTGTGCCATGCTTTATCCATTCAAAATGAAAGCAGAGGCCGTACATCCATGA

Protein sequence

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MRTRIENIVQSHMFRVNWIARSKSFKLDLNDLAWEVIRRSRFDEGCKLHLIRGFIDHLRKTRGRSRLKSSGDQSSTVVIAKQLYFFPRSLSLTATFLKSDRLPFSPSSLP
LPLVKGISIRGNGRIKTRTKETSIYQVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRVNFVIVFIF
LLQPDHKIKQSSYKITSFRWGTENARKSSLLGNRILEASSTKVDFHPCSLLVEPLLGSTNRTTATNAMPRVPRKEIGKQWNLSLSSVKSIIRSKIHKRIREGKESGVLKR
LIPSPDWLILIPFHESHGCGANYLCAMLYPFKMKAEAVHP

Clc08G18700 (gene) of Watermelon (cordophanus) v2 genome