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Clc09G00260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G00260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC7-like isoform X1
Genome locationClcChr09:241307..248701
RNA-Seq ExpressionClc09G00260
SyntenyClc09G00260
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR024661 - DNA-directed RNA polymerase III, subunit Rpc31


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059472.1 DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo var. makuwa]1.9e-6486Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKARRF
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK   F
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKARRF

TYK03851.1 DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo var. makuwa]1.9e-6486.49Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK +
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

XP_008462407.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [Cucumis melo]1.9e-6486.49Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK +
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

XP_022154143.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia]1.1e-6487.25Show/hide
Query:  MAFR-GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQIL
        MAFR GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSD+PEE+ L + N++ LNYWKASPF+LEENV+KK+QRTEIEKFSDRSK NSTLKRDSLAQIL
Subjt:  MAFR-GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQIL

Query:  QLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        QLTSRNFPEELVEGFKGKL+ KRKVQWNP SGLQKLDFLEKREESLK +
Subjt:  QLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

XP_038898864.1 glutamic acid-rich protein-like isoform X2 [Benincasa hispida]6.0e-7193.24Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLP VSDMPEE+SLA+RNNKFLNYWKASPFYLEENVMKK+QRTE+EKFSDRSKSNSTLKRDSLAQILQ
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        LTSRNFPEELV+GFKGKL+TKRKVQWNP SGLQKLDFLEKREESLK +
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

TrEMBL top hitse value%identityAlignment
A0A0A0KCT3 Uncharacterized protein8.7e-6863.79Show/hide
Query:  PPVASTVPPPLRLLSPKELDSTADRPSSGFCLLI----FEDTRV------------------------------------NFRGMAFRGRGRGRGGGGGA
        PP+AS  PPP      KE DSTA++PSS FCLLI    F  T +                                    NFRGMAF  RGRGRGGGGG+
Subjt:  PPVASTVPPPLRLLSPKELDSTADRPSSGFCLLI----FEDTRV------------------------------------NFRGMAFRGRGRGRGGGGGA

Query:  FQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKG
        FQYAKQEPFELFPENVTLPS+ +MPEE +LA+ +  F+ YWKASPFYLEENVMKK+QRTEIEKFSDR+K N+TLKRDSLAQI+QLTSRNFPEELVEGFKG
Subjt:  FQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKG

Query:  KLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        KL+TKRKVQWNP SGL+K+D LEKREESLK +
Subjt:  KLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

A0A1S3CGV4 DNA-directed RNA polymerase III subunit9.0e-6586.49Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK +
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

A0A5A7UU98 DNA-directed RNA polymerase III subunit RPC7-like isoform X19.0e-6586Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKARRF
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK   F
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKARRF

A0A5D3BVU1 DNA-directed RNA polymerase III subunit RPC7-like isoform X19.0e-6586.49Show/hide
Query:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ
        MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS+MPEE +LA+    FL YWKASPFYLEENVMKK+QRTEIEKFSDR K NSTLKRDSLAQI+Q
Subjt:  MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQ

Query:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        LTSRNFPEELVEGFKGKL+TKRKVQWNP SGL+K+DFLEKREESLK +
Subjt:  LTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

A0A6J1DMV9 ribosomal L1 domain-containing protein CG13096-like5.3e-6587.25Show/hide
Query:  MAFR-GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQIL
        MAFR GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSD+PEE+ L + N++ LNYWKASPF+LEENV+KK+QRTEIEKFSDRSK NSTLKRDSLAQIL
Subjt:  MAFR-GRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQIL

Query:  QLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR
        QLTSRNFPEELVEGFKGKL+ KRKVQWNP SGLQKLDFLEKREESLK +
Subjt:  QLTSRNFPEELVEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATTTTTTTGAACCCCCCACTAGCCTTCCCTCTTTCACACTGCCGTCCACCGGCCCCGGCTTCCACCGCTCGCCTCCATTCGCGCCGCCGATCCTAGTCGAACG
CTGCCTGACCGCCGCCGCCGTCGCTAACGTCAAAGCCTCTCTTTTCAACTCTCGCGCGATTCTCTCTCTCTCATACTTCATTCGATCGCCGCCTGTAGCCAGCACTGTGC
CTCCGCCGCTTAGGTTGCTTTCGCCGAAGGAACTTGATTCAACAGCAGACCGACCGTCTTCCGGCTTTTGTTTGCTGATATTTGAGGATACCAGGGTGAATTTCAGGGGG
ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGT
CAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAA
GAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTG
GTTGAAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTGGAGAAGCGTGAAGAATCTCTCAAGGC
AAGACGTTTTCCACCTCAATATCTCTCACTCCTTTCGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGC
ACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGATGAACCAGAATATTAGC
AGAATGGAAATTGGTGCCATACCCAAATGGACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATTTTTTTGAACCCCCCACTAGCCTTCCCTCTTTCACACTGCCGTCCACCGGCCCCGGCTTCCACCGCTCGCCTCCATTCGCGCCGCCGATCCTAGTCGAACG
CTGCCTGACCGCCGCCGCCGTCGCTAACGTCAAAGCCTCTCTTTTCAACTCTCGCGCGATTCTCTCTCTCTCATACTTCATTCGATCGCCGCCTGTAGCCAGCACTGTGC
CTCCGCCGCTTAGGTTGCTTTCGCCGAAGGAACTTGATTCAACAGCAGACCGACCGTCTTCCGGCTTTTGTTTGCTGATATTTGAGGATACCAGGGTGAATTTCAGGGGG
ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGT
CAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAATTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAA
GAACTGAGATAGAGAAATTTTCCGATAGATCTAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTG
GTTGAAGGTTTCAAAGGGAAGTTGCAGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTGGAGAAGCGTGAAGAATCTCTCAAGGC
AAGACGTTTTCCACCTCAATATCTCTCACTCCTTTCGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGC
ACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGATGAACCAGAATATTAGC
AGAATGGAAATTGGTGCCATACCCAAATGGACGTGA
Protein sequenceShow/hide protein sequence
MLHFFEPPTSLPSFTLPSTGPGFHRSPPFAPPILVERCLTAAAVANVKASLFNSRAILSLSYFIRSPPVASTVPPPLRLLSPKELDSTADRPSSGFCLLIFEDTRVNFRG
MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEEL
VEGFKGKLQTKRKVQWNPGSGLQKLDFLEKREESLKARRFPPQYLSLLSDRIRMIRRRKKEKKVKMKMKTKTMHSPRNLLMMIIIRMNTSTTMKMITTWKKKVEMNQNIS
RMEIGAIPKWT