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Clc09G00500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G00500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal_L28e domain-containing protein
Genome locationClcChr09:411279..412191
RNA-Seq ExpressionClc09G00500
SyntenyClc09G00500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059447.1 hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa]3.2e-3190.36Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
        MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPELPMERG+SLK+M+SEKLKTGIKKWAKAVVAYARTVS+RFGS RR
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR

KAG6575488.1 hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2785.37Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR
        MSVKKS SLTKAEE KR  RHDAARKRRRSFDLCFS PELPME G+SLK+MDSEKLK  I+KWAKAVVAYARTVSNRFGS R
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR

KAG6593505.1 hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia]6.6e-2984.34Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
        MSVKKSLSLTKAEE KR  RHDAARKRRRSFDLCFS P+L MERG+SLK+MDSEKLK+GI+KWAK+VVAYAR VS+RFGSWRR
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR

KGN45542.1 hypothetical protein Csa_016865 [Cucumis sativus]5.4e-3189.16Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
        MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPE+PMERG+SLK+M+SEKLKTGIKKWAKAVVAYARTVS+RFGS RR
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR

XP_034209907.1 uncharacterized protein LOC117623145 [Prunus dulcis]3.0e-1352.04Show/hide
Query:  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR
        MSVKKSLSL           TK+ ++           D    +RR FD CFS+ E+  E+G+SLKDMDSEKLK+GI++WAKAVVAYAR VS RFG  R
Subjt:  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR

TrEMBL top hitse value%identityAlignment
A0A0A0KB03 Uncharacterized protein2.6e-3189.16Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
        MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPE+PMERG+SLK+M+SEKLKTGIKKWAKAVVAYARTVS+RFGS RR
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR

A0A2P5FE88 Uncharacterized protein4.2e-1358.54Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR
        MSVKK+LSL + E  K  +       RR  +  CFS+ ELPMERG++LK+MDS KLK  IK+WAKAVVAYAR VS RFG  R
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR

A0A498IZM5 Uncharacterized protein4.2e-1356.63Show/hide
Query:  TMSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR
        T   +K+LSL   E  K     D    +R  FD CFS+ E+  E G+SLK+MDSEKLK+GIK+WAKAVVAYAR VS+RFGS R
Subjt:  TMSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR

A0A5A7UXU0 Uncharacterized protein1.5e-3190.36Show/hide
Query:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR
        MSVKKSLSLTKAEE KRL RH+AARKRRRSFDLCFSYPELPMERG+SLK+M+SEKLKTGIKKWAKAVVAYARTVS+RFGS RR
Subjt:  MSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWRR

A0A5E4F872 PREDICTED: PHAVU_010G142400g1.4e-1352.04Show/hide
Query:  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR
        MSVKKSLSL           TK+ ++           D    +RR FD CFS+ E+  E+G+SLKDMDSEKLK+GI++WAKAVVAYAR VS RFG  R
Subjt:  MSVKKSLSLTK------AEETKRLERH----------DAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKLKTGIKKWAKAVVAYARTVSNRFGSWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAGTCAAAGGAAGTGCCTTCACAACACGCATTTGGGCAGCATGTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCAAAACCAGATTGTCTCT
ACGGTTGAGCCAAATCCTTGGCTGCTTGACGAGCAGCCAAGAAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGACTAAGCGCCTCGAAA
GGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCATACCCAGAGCTACCAATGGAACGTGGACAATCTTTGAAAGATATGGATTCAGAGAAGTTG
AAGACTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAGTCAAAGGAAGTGCCTTCACAACACGCATTTGGGCAGCATGTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCAAAACCAGATTGTCTCT
ACGGTTGAGCCAAATCCTTGGCTGCTTGACGAGCAGCCAAGAAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGACTAAGCGCCTCGAAA
GGCATGATGCTGCCAGAAAGCGCAGGAGATCTTTTGATCTCTGTTTTTCATACCCAGAGCTACCAATGGAACGTGGACAATCTTTGAAAGATATGGATTCAGAGAAGTTG
AAGACTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAATTGAACCAGATGAAGTTTCCATGGAA
TTTGATGAATTTGACTACATTAGAATGACTCAGTTTCTCTATTGAACATGAGGTTTGTTTTTGTGTGAGAAGACCTTTGAAAGCAAAGTAGTTTCAATGGTGATGATGGG
TGCACGTTTTTTTTTTTGAGTCATTGGTTGGGACTTATGGCTTTCGTGAATAAAATGGATCAGAATGGGACTCGCTTGTATTGTGTCATGAAAGCTAAAGATCAAAAACA
ATGTACATAGTCTACTTTCTTGTTCCTTCTCCGTCTGAAATAAATTGCACCTTCAGCTTTTTCTTGAGGAATAAAGTGAGATTCTCTTTGATAAATGAACGATCACGGAA
ACAAAACAGTACAAAAGTGGTGCAAATGAATGATCTATCTCTCAATTCTTTTCCTCCCTTCATCCATTGAAAGAGGAAATGGGTTTAGAAAATCAAACCCAAAAAAAAAT
TATACACCAGGACGTGTGAATGTTCCAAAAAAG
Protein sequenceShow/hide protein sequence
MFKVKGSAFTTRIWAACVACPSCHLCHINMTKTRLSLRLSQILGCLTSSQEKKTMSVKKSLSLTKAEETKRLERHDAARKRRRSFDLCFSYPELPMERGQSLKDMDSEKL
KTGIKKWAKAVVAYARTVSNRFGSWRR