CuGenDBv2

Gene ID	Clc09G00860
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	ClcChr09:654076..661586
RNA-Seq Expression	Clc09G00860
Synteny	Clc09G00860
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

2.1e-218

89.52

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+RM+ELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEIARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP+PLQFP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

4.5e-213

87.76

Show/hide

Query:  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRM
        ESM +DTKS+ELEENH     A+S SPAKKKKKSEKKKKRV S++AKIQVLSN PQK+PP+VGYFPSGFDPHK AD+   E+  SVRARVYKHKN+PNRM
Subjt:  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRM

Query:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSK
        QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+RM+ELT LYGTK+SK
Subjt:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSK

Query:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY
         QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AE+ARNIP YNASATTP+EAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIY
Subjt:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY

Query:  KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTS
        KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVL+LF D+FSSDPADIAKDLRTS
Subjt:  KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTS

Query:  PYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        PYDLRLHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  PYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

6.1e-218

89.29

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+RM+ELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEIARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP+PLQFP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

8.5e-212

86.33

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANS SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV YFPSGFDPHK A+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA++M+ELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTKKDLD +MKNVVVNKEALE T A+IARNIP YN SATTP EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++RR+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLP PL+FP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

7.9e-226

93.39

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENH AE D NS SPAKKKKKSEKKKKRVPSVNAKIQVL NHPQK+PP+VGYFPSGFDPHK AD    EEQNSVRARVYKHKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRM+ELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDPDTKKDLDVRMKNVVVN EALEGT AEIARNIP YNASATTP+EAYPLDKIILKGEW+FLEDLYFRLQETAEISANYP FVR+RIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPTS+SRRISTEK NLLISHVLVLTLFVD+FSSDPADIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

2.2e-213

87.76

Show/hide

Query:  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRM
        ESM +DTKS+ELEENH     A+S SPAKKKKKSEKKKKRV S++AKIQVLSN PQK+PP+VGYFPSGFDPHK AD+   E+  SVRARVYKHKN+PNRM
Subjt:  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRM

Query:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSK
        QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+RM+ELT LYGTK+SK
Subjt:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSK

Query:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY
         QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AE+ARNIP YNASATTP+EAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIY
Subjt:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY

Query:  KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTS
        KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVL+LF D+FSSDPADIAKDLRTS
Subjt:  KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTS

Query:  PYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        PYDLRLHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  PYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

2.9e-218

89.29

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+RM+ELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEIARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP+PLQFP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

1.0e-218

89.52

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+RM+ELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEIARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SRR+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP+PLQFP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

1.7e-210

85.65

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPD+N  SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV YFPSGFDPHK  +EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA++M+ELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KL +LKQEDDPDTKKDLD +MKNVVVNKEALE T A+IARNIP YN SATTP EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++RR+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLP PL+FP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

4.1e-212

86.33

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Query:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANS SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV YFPSGFDPHK A+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA++M+ELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQ

Query:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTKKDLD +MKNVVVNKEALE T A+IARNIP YN SATTP EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  ALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++RR+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLP PL+FP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

7.4e-09

25.22

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Query:  KKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCT
        K K  K +         +++L       PPLV    SGF P             + R ++ K  N+ NR   ++  T   V F   N   ++TA  +   
Subjt:  KKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCT

Query:  YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNL---YGTKRSKMQALKLHA--LKQEDDPDTKKDLDVRM
        Y L V DK  +  KIVP      F      R     + +   +  +  +V      M++  NL   +GT++S+   ++  A  +K E   D K  L   +
Subjt:  YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNL---YGTKRSKMQALKLHA--LKQEDDPDTKKDLDVRM

Query:  KNVVVNKEALEGTHAEIA------RNIPMYNASATTPEEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISANYPSFVRNRIYKLQDIQDEEEKKKL
         NV    EAL  T  +IA      R IP  N  A + E+AY L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+  
Subjt:  KNVVVNKEALEGTHAEIA------RNIPMYNASATTPEEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISANYPSFVRNRIYKLQDIQDEEEKKKL

Query:  CCIFSYITHLIKYK-DQHSVGDVSSAKGHKI--PSMLRQKFSSMFPTS---DSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHF
          I  YI+ L  +   + SVG+  + +      P +L       F  +    S ++S+ + + +I ++LVL L VD +S+D   +A DL          F
Subjt:  CCIFSYITHLIKYK-DQHSVGDVSSAKGHKI--PSMLRQKFSSMFPTS---DSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHF

Query:  DNLGCKFIR---------------KNNLSLVTLPIPLQFPDLRQKRRR
          +GC+ +                  N     L IPL+FP  R+ R R
Subjt:  DNLGCKFIR---------------KNNLSLVTLPIPLQFPDLRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

4.9e-13

23.2

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Query:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTK--RSKMQALKLHALKQEDDPDTKKDLDVR
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  ++ + S  ++ E     E+ D++K+L + +G+K  + KMQ +++  ++  D   T K +D  
Subjt:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTK--RSKMQALKLHALKQEDDPDTKKDLDVR

Query:  MKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT
        +KN + + E+ E        ++P ++A      + Y ++ I+    +  L    F   + +T+E  +  P + ++++ + +DI+DEE+    C + +++ 
Subjt:  MKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT

Query:  H---LIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIR-
        +   L+K K  H    +      ++ + L   F S         IS +    + +++ +  L ++ F  +D   +A+ L  +      HF  +GCK +R 
Subjt:  H---LIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIR-

Query:  KNNLSLVTLPIPLQFPDLR
         +    V L  PL+ P  R
Subjt:  KNNLSLVTLPIPLQFPDLR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

3.7e-96

44.22

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Query:  ELEENHNAEPDANSLSPAKKKKKSEKK--------KKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHK-NKPNRMQ
        E  +  N E D N+    +KK++  KK         +    V  K+  ++  P +  P+V YF +G+DP KV  +       + +  VYKHK +   R+Q
Subjt:  ELEENHNAEPDANSLSPAKKKKKSEKK--------KKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRMKELTNLYGTKRSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  + +E E S S   +EL   +  +R     + Y TK++ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRMKELTNLYGTKRSK

Query:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI
         +  K  AL   DD  T+K LD ++  + VN  ALEGT + +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ LQ+  E +   YP FVRNR+
Subjt:  MQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI

Query:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRT
        Y+L+DI+D+ +K+ +C   + +THL+K+KD++S+    SAK HK+P + RQKF+SMF  S+S RI  +K NLLIS+VLVL+L VD F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRR
        S  +LR HF  LGCKF+++N+ ++ TLP PL FP++ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRR

Sequences

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CDS sequence

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ATGGCGTGTCTTGCTTCAACCACTGTTGCCGCTCCCAGTACCGACGGCAAATCAGTCGCCGCCCTCGTCCACTGCTGCGGGACTGTAATTCCGGAAGCCGCTTACTCCCG
GTTCGTGTTCGACCGAAGATCGTCTACGGAATCAATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAATCATAACGCAGAACCAGACGCAAACTCACTGTCTCCAG
CGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAAGTCCGCCGCTAGTTGGTTAT
TTCCCGTCTGGGTTTGATCCTCACAAGGTTGCCGATGAGGAAGCAGCTGAGGAACAGAATTCCGTTAGGGCTAGGGTTTACAAGCACAAGAACAAACCAAATAGGATGCA
GCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTCGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTCGATA
AGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCAAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTTGCA
AATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAATGAAAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAGATGCAGGCATTGAAGCTGCATGCATTGAAGCA
AGAGGATGATCCTGATACCAAGAAGGATCTAGATGTGAGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGAGGGTACGCATGCAGAAATTGCTCGTAATATACCAA
TGTATAATGCTTCTGCAACTACTCCAGAAGAAGCTTACCCACTCGATAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTACTTCCGTTTGCAAGAAACA
GCTGAAATTAGTGCTAATTATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAGAAGAAGCTGTGCTGCATATTTTCATATAT
CACTCATCTAATAAAGTATAAGGATCAGCATTCTGTGGGTGATGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCCTCCATGTTTCCAA
CTTCCGATTCGAGGAGAATTTCAACGGAGAAAAGTAATCTTCTCATTAGCCACGTTTTGGTGCTCACACTATTTGTCGACAAATTCAGCAGTGATCCAGCAGACATAGCA
AAGGATCTGAGAACCAGTCCTTATGATCTAAGGCTCCATTTTGATAACTTGGGTTGCAAGTTTATACGCAAGAACAATCTTTCATTGGTTACACTTCCTATACCCCTTCA
ATTTCCAGACTTGAGGCAAAAGAGACGAAGATAG

mRNA sequence

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Protein sequence

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MACLASTTVAAPSTDGKSVAALVHCCGTVIPEAAYSRFVFDRRSSTESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGY
FPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVA
NEELSVQEKADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQET
AEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIA
KDLRTSPYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

Clc09G00860 (gene) of Watermelon (cordophanus) v2 genome