CuGenDBv2

Gene ID	Clc09G01370
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	LEA_2 domain-containing protein
Genome location	ClcChr09:1146565..1148247
RNA-Seq Expression	Clc09G01370
Synteny	Clc09G01370
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR004864 - Late embryogenesis abundant protein, LEA_2 subgroup

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059364.1 uncharacterized protein E6C27_scaffold242G00900 [Cucumis melo var. makuwa]

5.2e-103

86.58

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QICTLYTLKRFC FLLFVA+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT++SGSPILSSVFTLTLNSQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYDG+A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLH     MKVALKC+VDVDY KLN +EEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CGIAFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

XP_004141823.1 uncharacterized protein LOC101214000 [Cucumis sativus]

5.1e-106

87.45

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QICTLYTLKRFCFFLLF+A+FSIIAIAIAALPVIFLLKPREPIFSL S+RLDWYNIT+RSGSPILSSVFTLTLNSQNPNK+GI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYD +AVIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLET REFVEMKIIGDVGVELFVLH+ VIKMKVALKC+VD+DY KLNFREEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CGIAFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

XP_008462250.1 PREDICTED: uncharacterized protein LOC103500653 [Cucumis melo]

4.3e-105

87.45

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QI TLYTLKRFC FLLF A+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+RSGSPILSSVFTLTLNSQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYDG+A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLH+ VIKMKVALKC+VDVDY KLN REEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

XP_022992383.1 uncharacterized protein LOC111488707 isoform X1 [Cucurbita maxima]

4.4e-102

83.98

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVLAS T FSNRFCC QICTLYTLKRFC FLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ SGSP +SSVFTLTL SQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLI+DG A+IGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGD+GVELFVLH+AVIKMKVAL CNVDV Y  LNFRE++
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNGATV KALDS PSNS T +TNCG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

XP_038899414.1 NDR1/HIN1-like protein 13 [Benincasa hispida]

2.3e-111

92.21

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL S TPFS+RFCC+QICTLYTLKRFCFFL  VALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSP+RLLLIYDGTAVIGTIRVPEVFQPARS D+SVRTRLLLHQF+VDLLET++EFVEMKIIGDVGVELFVLH+AVIKMKVALKC+VDVDY KLNFREEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNGATVEKALDSIPSNSK  STNCG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6V0 Uncharacterized protein

2.4e-106

87.45

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QICTLYTLKRFCFFLLF+A+FSIIAIAIAALPVIFLLKPREPIFSL S+RLDWYNIT+RSGSPILSSVFTLTLNSQNPNK+GI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYD +AVIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLET REFVEMKIIGDVGVELFVLH+ VIKMKVALKC+VD+DY KLNFREEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CGIAFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

A0A1S3CGG7 uncharacterized protein LOC103500653

2.1e-105

87.45

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QI TLYTLKRFC FLLF A+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+RSGSPILSSVFTLTLNSQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYDG+A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLH+ VIKMKVALKC+VDVDY KLN REEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

A0A5A7UWA2 LEA_2 domain-containing protein

2.5e-103

86.58

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVL  +TPFS+RFCC QICTLYTLKRFC FLLFVA+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT++SGSPILSSVFTLTLNSQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLIYDG+A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLH     MKVALKC+VDVDY KLN +EEI
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNG +V KALDSIPSNSKT S+ CGIAFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

A0A6J1GP37 uncharacterized protein LOC111456218 isoform X1

1.4e-101

83.55

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVLAS T FS+RFCC QICTLYTLKRFC FLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ S SP +SSVFTLTLNS+NPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLI+DG A+IGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGDVGVELFVLH+AVIKMKVAL CNVDV Y  LNFRE++
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNGATV KALDS PSNS T +TNCG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

A0A6J1JZ17 uncharacterized protein LOC111488707 isoform X1

2.1e-102

83.98

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Query:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI
        MDVLAS T FSNRFCC QICTLYTLKRFC FLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ SGSP +SSVFTLTL SQNPNKIGI
Subjt:  MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGI

Query:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI
        KYSPSRLLLI+DG A+IGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGD+GVELFVLH+AVIKMKVAL CNVDV Y  LNFRE++
Subjt:  KYSPSRLLLIYDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEI

Query:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL
        LGNGATV KALDS PSNS T +TNCG+AFYL
Subjt:  LGNGATVEKALDSIPSNSKTASTNCGIAFYL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G44380.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

1.7e-06

34.44

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Query:  AIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLIYDGTAVIGTIRVPEVFQPARS
        A +  A   +   KP++P F L S+ L     +++   P+L +   LT++  NPN   I YS +++ ++YDGT V+G+  V    QPARS
Subjt:  AIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLIYDGTAVIGTIRVPEVFQPARS

AT5G11890.1 FUNCTIONS IN: molecular_function unknown

1.8e-05

35.35

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Query:  PFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPI--LSSVFTLTLNSQNPNK-IGIKYSP
        P   R CC   C        CF+ + + L   +  AIAA  +  +  PR P FS+ S+R+   N+T  S S +  LSS F  TL S+NPN+ +   Y P
Subjt:  PFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPI--LSSVFTLTLNSQNPNK-IGIKYSP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGTTCTTGCATCCGAAACTCCATTTTCAAATCGCTTTTGCTGCGACCAGATCTGTACGCTTTATACTCTAAAACGATTCTGCTTTTTTCTTCTCTTTGTCGCTCT
CTTTTCAATCATCGCGATTGCGATCGCCGCTTTGCCTGTAATTTTCTTGTTGAAGCCTCGAGAGCCGATTTTTTCTCTCCAATCACTTCGATTGGATTGGTACAACATTA
CCGTCAGATCTGGCTCTCCAATTCTTTCTTCGGTTTTCACTCTCACTCTCAATTCTCAAAACCCTAACAAAATCGGCATTAAGTACAGTCCGTCGAGGCTTCTCCTGATC
TATGATGGAACCGCCGTGATCGGAACGATTCGAGTGCCTGAAGTGTTCCAGCCCGCTCGTAGCGGCGATCGGAGTGTTCGAACTCGTTTGTTGTTGCATCAATTCAATGT
GGATTTGTTGGAGACGATGAGAGAGTTTGTTGAGATGAAAATCATCGGCGATGTTGGTGTAGAGCTGTTTGTGCTTCATATCGCTGTGATCAAGATGAAGGTTGCTTTGA
AATGCAATGTGGATGTTGATTACGGAAAGCTTAATTTCAGAGAAGAAATACTTGGCAATGGAGCAACTGTAGAAAAAGCTTTGGATTCAATTCCTTCCAACTCCAAGACA
GCGTCCACAAACTGTGGCATCGCTTTTTACTTATGA

mRNA sequence

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Protein sequence

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MDVLASETPFSNRFCCDQICTLYTLKRFCFFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVRSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLI
YDGTAVIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHIAVIKMKVALKCNVDVDYGKLNFREEILGNGATVEKALDSIPSNSKT
ASTNCGIAFYL

Clc09G01370 (gene) of Watermelon (cordophanus) v2 genome