CuGenDBv2

Gene ID	Clc09G01820
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	AAA_11 domain-containing protein
Genome location	ClcChr09:1510454..1511576
RNA-Seq Expression	Clc09G01820
Synteny	Clc09G01820
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0004386 - helicase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR045055 - DNA2/NAM7-like helicase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059329.1 helicase SEN1 isoform X4 [Cucumis melo var. makuwa]

1.2e-88

92.4

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

TYK03996.1 uncharacterized protein E5676_scaffold347G001940 [Cucumis melo var. makuwa]

1.1e-89

92.44

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Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEVC
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEVC
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEVC

XP_038897394.1 uncharacterized protein LOC120085485 isoform X1 [Benincasa hispida]

1.7e-90

93.57

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+APTKTQLLARWRGIEEEDDTG G+H QPHRFQQLKE+WFADAFTYLISLP+ESHIWC SWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQCICQHHQAKDMYSSEYE SSIGPLLDVLRRLDEERVTQYLRNINHRISQ+EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

XP_038897395.1 uncharacterized protein LOC120085485 isoform X2 [Benincasa hispida]

1.7e-90

93.57

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+APTKTQLLARWRGIEEEDDTG G+H QPHRFQQLKE+WFADAFTYLISLP+ESHIWC SWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQCICQHHQAKDMYSSEYE SSIGPLLDVLRRLDEERVTQYLRNINHRISQ+EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

XP_038897401.1 uncharacterized protein LOC120085485 isoform X6 [Benincasa hispida]

1.7e-90

93.57

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+APTKTQLLARWRGIEEEDDTG G+H QPHRFQQLKE+WFADAFTYLISLP+ESHIWC SWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQCICQHHQAKDMYSSEYE SSIGPLLDVLRRLDEERVTQYLRNINHRISQ+EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAJ6 Uncharacterized protein

7.8e-86

91.23

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEEDDTG G   QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDES DSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQC+CQHHQAKDMYSSEYE+SSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

A0A1S3CGD9 uncharacterized protein LOC103500612 isoform X1

5.7e-89

92.4

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

A0A1S4E3P9 uncharacterized protein LOC103500612 isoform X4

5.7e-89

92.4

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

A0A5A7V0K3 Helicase SEN1 isoform X4

5.7e-89

92.4

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEV
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

A0A5D3C0M2 Uncharacterized protein

5.2e-90

92.44

Show/hide

Query:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH
        MTS+A TKTQLLARWR IEEED+TG G H QPHRFQQLKEEWFADAFTYLISLP+ESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN 
Subjt:  MTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNH

Query:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEVC
        CIQC+CQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQ EYDAA+DNSEVV VVYEVC
Subjt:  CIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEVC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.4e-55

59.88

Show/hide

Query:  MTSVAPTKTQLLARWRGIEE-EDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN
        M S      +LL RWR IEE E++  D   S   R  Q KE+WF DAFT LISLP+++HIWCG  DIMGPL+ETFYNYFKD+  DSPL+ LWKRIS EM 
Subjt:  MTSVAPTKTQLLARWRGIEE-EDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMN

Query:  HCIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV
         C QCICQHHQ ++MY  EYE SS+GPLL VLR+LDEERVT++L+ IN +I +  YD    ++EVV V+YEV
Subjt:  HCIQCICQHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEV

Sequences

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CDS sequence

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ATGCATATTGGTGAGTACGAGACGGCCTTTCCTTTACTTTCCTTTTTGTTTCGTTTCCCGCGCCCAAAACCGCCAAGCGAGACTGAGAGGGCGAGTGATTTTGATCGCAC
AATCATCGCCCTATCGTCACCAGCACCGGGCTCACTGACTAAGCTTTGTCGATCAACCAAGAACAAATTAACCGACCGAGAACAACACCCTCCTTCCGAATCCCAATCTC
TTCTCTTCTCTCAGTCGTTGCCCAGCCATCCACCGCCATGCATTCCCCTCTTATCTTTACTCACTCTCGTCTTCTTCCCATTTTATCATCTTAATCACACTTTCAGACCC
TGTCTCCGGTCAATGACTTCCGTGGCTCCCACGAAGACACAACTATTGGCACGCTGGCGAGGCATCGAGGAAGAAGACGACACCGGCGATGGCATACACTCACAACCTCA
TCGCTTTCAACAGCTTAAAGAGGAATGGTTTGCAGACGCTTTCACTTATTTGATTAGTTTGCCCCGAGAAAGTCACATTTGGTGTGGATCTTGGGATATAATGGGGCCTC
TTCTGGAGACATTTTACAATTATTTCAAAGATGAAAGCCACGATTCTCCTCTCAGGCGCCTATGGAAGAGGATCTCTATGGAAATGAATCATTGTATCCAGTGCATCTGC
CAGCATCACCAAGCCAAAGATATGTATAGTTCGGAGTATGAGTTGAGTTCCATCGGACCCCTTCTTGATGTATTGAGAAGACTTGACGAGGAAAGGGTCACTCAATACTT
GAGAAATATCAATCACAGAATATCACAGGATGAATATGATGCTGCCGAGGATAATTCTGAAGTTGTCTGTGTCGTTTATGAGGTTTGTTAG

mRNA sequence

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Protein sequence

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MHIGEYETAFPLLSFLFRFPRPKPPSETERASDFDRTIIALSSPAPGSLTKLCRSTKNKLTDREQHPPSESQSLLFSQSLPSHPPPCIPLLSLLTLVFFPFYHLNHTFRP
CLRSMTSVAPTKTQLLARWRGIEEEDDTGDGIHSQPHRFQQLKEEWFADAFTYLISLPRESHIWCGSWDIMGPLLETFYNYFKDESHDSPLRRLWKRISMEMNHCIQCIC
QHHQAKDMYSSEYELSSIGPLLDVLRRLDEERVTQYLRNINHRISQDEYDAAEDNSEVVCVVYEVC

Clc09G01820 (gene) of Watermelon (cordophanus) v2 genome